Gene detail

Gene detail information of Glyur000425s00021386

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	3.00E-126	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_004510225.1	0	PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum]
COG	YP_008735610.1	1.00E-07	regulatory protein [Actinoplanes friuliensis DSM 7358]
Swissprot	tr\|Q40392\|TMVRN_NICGU	7.00E-92	TMV resistance protein N
trEMBL	tr\|G7LF48\|G7LF48_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AET01406.1}

Sequence

Transcript Sequence

>Glyur000425s00021386.1
ATGGGAGGATCGGGTAAAACAACCACAGCCAAAGCCATCTACAATCAAATTCATCGCAAATTTGTGTATAGAAGTTTCATTGAAAATATTAGAGAAGTTTGTGATACGGATAGTAGAGGGAATATTCATTTACAACAACAACTTCTTTTGGATGTCCTCAAAACAAAGGAGAAGATTCATAGCATTGCGTCGGGGGCAATCATAATCAAGAAAAGACTTTCTGGAAAAAGGGTACTCATTGTACTTGATGATGTGACCACATTAGAGCAGGTAAAAACCCTATGTGGAAATCATAAATGTTTTGGTTCAAGAAGTGTATTAATTGTTACAACCAGGGATGCACGGATACTTAATTCACTTAAAGTTGGCCATGTATATACAATGAAGGAAATGGATGAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGACAATCAAGTCCAAGAGAAGATTTTAGTGAACTCTCAAGAAACGTAATTGCTTACTGTGGAGGATTACCACTAGCTCTTGAAGTCCTTGGATCTTTCTTATATGAGAGGACAAAACAAGAATGGAAAAGTGTACTATCAAAACTAGAGAGAATTCCCAACGATCAAGTGCATGAGAAGTTGAGAATAAGCTATGATGGTTTAAAAGATGATATGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGCAAGGACAGAGGCTATGTTACAGAGATACTAAATGGATGTGGACTTTGTGCTGATATAGGAATAGCTGTCCTCATAGAGCGGAGCCTTCTGAAAGTTGACAAGAATAATAAGCTTGGAATGCATGATTTGATAAGAGACATGGGAAGAGAAATTGTTCGTGAGAGTTCAGCAAAAGAGCTTGGGAAACGTAATCGATTATGGTTTCATGAGGATGTGCATGATGTTTTGAGAAATAATACTGGAACAGAAACCGTTGAGGGATTGATTTTGAAGTCGGAAAGAACAGGCAGAGCTAGCTTCAGTACTAATGCTTTCAGTGAAATGAAGAAATTGAGACTTTTACAACTTGATCGTGTTGACCTCACTGGAGATTATGAGTATCTTTCTAAACAACTGAGATGGGTTTACTGGCAAGGATTTACCTTCAAATGTATACCTCATGACTTTTATCAGGAAAATCTAGTAGTTCTTGAACTTAAATATAGCAAAATTAAACAAGTTTGGAAGGAAACCAAGTTGTTGAAGAAGCTGAAAATTCTCAATCTCGGTCATTCCAGGTACTTGAAAAACACCCCTGACTTTTCAAAATTACCAAATCTTGAAAAGCTCATTATGAAGGATTGTCCAAGTTTGTCTGAGATACACCATTCCATTGGAGATCTCAATAATCTTCTTCTGATAAATTTGAAGGACTGTACAAGTCTTAGCAATCTCCCAAGGAAGATCTATCAATTGAAATCATTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTAGCAAGTTGGAAGAAGACATAGTGCAGATGGAAGCCTTGACAACACTTATTGCAAAAGATACAGGTGTAAGAGAAGTGCCCTATTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATTTGAAGGATTATCACAGGATGTTTTTCCTTCTCTCATTCGATCTTGGATGTCACCAACCATGAATTCTCTACCTTGTATTTCCCCATTAGCCGGCTTGTCATCCTCTCTAGTTTCCTTGGGTGTAGAGAGTAATAATTCAGGCTATCTATCACCAATGCTTAACAACCTTTCAAAACTTAGGAGTGTTTGGTTACAATGCTGCTCAGAGATTCAACTAACTCAAGAATTAAGAAAATTTCTTGATGATTTAAATGGTACCAAGTTGCAAACAACATCACATGTGTCACAAATCGCAGATCTTTCATTGAAGTCGCTTTTGATCGGAATGGGAAATTGCCACGTAGTCATCGACACTCTCAGCAAGAGCATATCACAGGGATTGACCACTAATGATTCTAGTGATTCTTTCCTTCCGGGTGACAATTATCCTACTTGGTTGGCTTATACATGTGAAGGACCGTCAGTACTTTTTCAAGTGCCCGAGGGTAGTGATTCTTGCATGAAGGGAATAGCTTTATGTGTTGTATATTCATCAACACCTGAAAATATGGCAACTGAATGTCTTACTAGTGTCTTGATCATTAATTATACAAAATTCACTATCCAGATGTACAAGCGAGACACAGTAATGTCCTTTAATGATGAAGATTGGGAGGGTGTAATTTCAAATTTAGGAGTTGGTGACAATATAGAGATTTTTGTAGCTTTTGGGCGTGGATTGACTGTTAAGGAGACAGCAGTCTATCTAATATATGGCCAGTCAACTACTACAGAATTTGAGCCATCAGTTACTACAGAAATTGAGCCAACTGATGTAAAAATGGAGCCATCAGCTGAAGTGAAGGTGCAGCCATCACCTAATGTGGAAACGGAGCCATCACCTGAAGAGGAAGTACAGCCATTACAAAATGTGAAAATGCAGCCATCACCTAATGTCAGGGAGCCATTGCCGAAGCCAAATAAAAAATTCTTTACAAGACTTGCAAGAAGAATGGGAGAATGTAAGCACAGAGCCTATGTTACAGAGATATGGAATAGCTGTGGACTTTATGCTGATATTGGAATAACTGTTCACCTAGAGCAGAGTCGACTGAAAGTTGAAAAGAATAACAAGCTTCGAATGCATGATTTGCTAAGAGACATGGGAGACAAACTGTTCGTGAGTGTTCGTGAGAGTTCAGCAAAAGAACCTGGGAAGCGTAGCCCATTGTGGTTTCACGAGGACGTACATGTTTTGACAAAATATACAGGAACAGAAACTGTAGAGGGATTGGTTTTGAAGGTTCAAAAAACCAACAGAGTTTGCTTCAATACTGATTCTTTCGTGGAGATGAAGAAACTGAGACTTCTACAACTTGAATGTGTTGACCTCACTGATTATTTTGGGCATCTTTCCAAACAACTGAGATGGGTCAATTTGCAAGGATTTATCTTCAGAGGTATAACTGATGACTTTTATCAAGGAAATCTAGTTGTTATTGACTTGAAATATAGCAATATTAAGCAAGTATGGAAGGAAACCAAGTTGCTGGAGAAGCTAAAAATTCTCAATCTCAGTCATTTCAGGAACTTGAAAACTACCATCGACTTTTCAAAACTTCCGAATCTAGAAAAGCTCATTCTGAAGGACCGTCCAAGTTTGTCCGAGATACACCACCAGTCCATTGGAGATATCAGTAATATTCTTCTTATAAATCTGAAGGACTGTGCAAGTCTTAGCAGTCTCCCGAGGCAAATCTATCAATTAAAATCTTTGAAAGCACTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTAGAAGAAGATATAGAGCAGATGGAATCATTGAAGACACTACTTGCAAAAGACACAGCTGTAAAAGAAGTGCCCTATTCATTAGTAAGATCAAAAAGCATTGAATATATATCCCTATGTGGTTATGAAGGATTATCACGTGATGTTTTCCCTTCTCTCACTTGGTCTTGGATGTCGCCGTCAATGAATCCCTTACCGTGCATTCCCCCTTTTGGGAGCATGTCATTGTCTCTAGTTTCCTTGAATGTAGAGAGTGATAATTTGGATATGGGCTATCTATCACCAATGGTTAGCCGTCTTTCAAAACTTAGAAGAGTTGGTGACAATGTAGAGATTTTTGTAGCTTTTGGGAATGGATTGACTGTTAAGGGGACAGCAGTCTATCTAATATATGGCCAGTCAACTACAAGGGAATTTGAGCCATCAGTTATTATGGAAATTGAGCTAGCAACTGATGTAAAAATGGAGCCATAG

Protein Sequence

>Glyur000425s00021386.1
MGGSGKTTTAKAIYNQIHRKFVYRSFIENIREVCDTDSRGNIHLQQQLLLDVLKTKEKIHSIASGAIIIKKRLSGKRVLIVLDDVTTLEQVKTLCGNHKCFGSRSVLIVTTRDARILNSLKVGHVYTMKEMDENESLELFSWHAFRQSSPREDFSELSRNVIAYCGGLPLALEVLGSFLYERTKQEWKSVLSKLERIPNDQVHEKLRISYDGLKDDMEKDIFLDICCFFIGKDRGYVTEILNGCGLCADIGIAVLIERSLLKVDKNNKLGMHDLIRDMGREIVRESSAKELGKRNRLWFHEDVHDVLRNNTGTETVEGLILKSERTGRASFSTNAFSEMKKLRLLQLDRVDLTGDYEYLSKQLRWVYWQGFTFKCIPHDFYQENLVVLELKYSKIKQVWKETKLLKKLKILNLGHSRYLKNTPDFSKLPNLEKLIMKDCPSLSEIHHSIGDLNNLLLINLKDCTSLSNLPRKIYQLKSLKTLILSGCSKISKLEEDIVQMEALTTLIAKDTGVREVPYSIVRSKSIGYISLCGFEGLSQDVFPSLIRSWMSPTMNSLPCISPLAGLSSSLVSLGVESNNSGYLSPMLNNLSKLRSVWLQCCSEIQLTQELRKFLDDLNGTKLQTTSHVSQIADLSLKSLLIGMGNCHVVIDTLSKSISQGLTTNDSSDSFLPGDNYPTWLAYTCEGPSVLFQVPEGSDSCMKGIALCVVYSSTPENMATECLTSVLIINYTKFTIQMYKRDTVMSFNDEDWEGVISNLGVGDNIEIFVAFGRGLTVKETAVYLIYGQSTTTEFEPSVTTEIEPTDVKMEPSAEVKVQPSPNVETEPSPEEEVQPLQNVKMQPSPNVREPLPKPNKKFFTRLARRMGECKHRAYVTEIWNSCGLYADIGITVHLEQSRLKVEKNNKLRMHDLLRDMGDKLFVSVRESSAKEPGKRSPLWFHEDVHVLTKYTGTETVEGLVLKVQKTNRVCFNTDSFVEMKKLRLLQLECVDLTDYFGHLSKQLRWVNLQGFIFRGITDDFYQGNLVVIDLKYSNIKQVWKETKLLEKLKILNLSHFRNLKTTIDFSKLPNLEKLILKDRPSLSEIHHQSIGDISNILLINLKDCASLSSLPRQIYQLKSLKALILSGCSKIDKLEEDIEQMESLKTLLAKDTAVKEVPYSLVRSKSIEYISLCGYEGLSRDVFPSLTWSWMSPSMNPLPCIPPFGSMSLSLVSLNVESDNLDMGYLSPMVSRLSKLRRVGDNVEIFVAFGNGLTVKGTAVYLIYGQSTTREFEPSVIMEIELATDVKMEP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00425	13745	21499	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000425s00021386.1	PF00931.17	NB-ARC	1	233	6.30E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.554
SRR1783600	control	2.533
SRR1783602	moderate drought stress	3.382
SRR1811619	moderate drought stress	3.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.761
DRR006520	Root Summer glycyrrhizin high producing strain	1.685
DRR006521	Root Winter glycyrrhizin high producing strain	0.448
DRR006522	Root Winter glycyrrhizin high producing strain	0.361
DRR006523	Root Summer glycyrrhizin low producing strain	0.142
DRR006524	Root Summer glycyrrhizin low producing strain	0.228
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.633
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.648

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.000
SRR2868004	Drought Stress (root)	1.321
SRR2967015	Control (root)	1.549

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.372
SRR9715740	Leaf	1.825
SRR9715741	Leaf	1.195
SRR9715739	Root	0.187
SRR9715742	Root	1.835
SRR9715743	Root	1.393

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.157
SRR8400027	Control - Root	7.047