Gene detail information of Glyur000424s00026898 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19330.2 | 3.00E-45 | Protein of unknown function (DUF677) |
| NR | XP_004493091.1 | 3.60E-157 | PREDICTED: UPF0496 protein At3g19330-like [Cicer arietinum] |
| Swissprot | tr|Q9LT84|U496M_ARATH | 4.00E-67 | UPF0496 protein At3g19330 |
| trEMBL | tr|G7KXB2|G7KXB2_MEDTR | 4.00E-154 | Transmembrane protein, putative {ECO:0000313|EMBL:AES80736.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00424 | 53067 | 55103 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000424s00026898.1 | PF05055.7 | DUF677 | 127 | 384 | 2.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.773 |
| SRR1783600 | control | 8.869 |
| SRR1783602 | moderate drought stress | 7.493 |
| SRR1811619 | moderate drought stress | 7.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.833 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.443 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.445 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.786 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.507 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.767 |
| SRR2868004 | Drought Stress (root) | 4.322 |
| SRR2967015 | Control (root) | 5.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.680 |
| SRR9715740 | Leaf | 3.367 |
| SRR9715741 | Leaf | 2.111 |
| SRR9715739 | Root | 3.967 |
| SRR9715742 | Root | 3.450 |
| SRR9715743 | Root | 3.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.680 |
| SRR8749028 | MeJA induced 9h | 4.197 |
| SRR8749029 | MeJA induced 9h | 4.919 |
| SRR8749030 | Uninduced | 1.739 |
| SRR8749031 | Uninduced | 1.501 |
| SRR8749032 | Uninduced | 0.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.698 |
| SRR8400027 | Control - Root | 4.452 |