Gene detail

Gene detail information of Glyur000423s00024445.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71695.1	4.00E-54	Peroxidase superfamily protein
NR	KHN46463.1	3.32E-93	S-norcoclaurine synthase [Glycine soja]
Swissprot	tr\|Q96520\|PER12_ARATH	7.00E-64	Peroxidase 12 (Precursor)
trEMBL	tr\|I1LP68\|I1LP68_SOYBN	1.00E-93	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01970.1}

Sequence

Transcript Sequence

>Glyur000423s00024445.1
AGCATTTTCAAGGATAAAGCTTTTCTGCAAAANAGAGATGTTTGGGCAGCTTGAACATGAGTTAGAGCTACTTGTGCCTGCAAGTGAGGCATGGGATCTCTTTGGNACCCTTGGAATTGGAAAACTTGTTGAGCAAGAGATGCCAGAATTGTTCCANAAAGTGGAGTTAATTGAAGGTGATGGAGGGGTTGGGACTGTCCTCAAACTAACATTCACTCCAGGTATACCAGGGCCAGCCGGTTACAAAGAGAAGTTCACCAAGATTGATAATGAGAAACGCATCAAAGAAGCAGATGTGGTTGAAGGAGGGTACTTGGATTTTGGGTTCACTCTATTTAGAGTACGATTTGAAGTGATAGAGAAAGGTGAAGAATCAAGCATAATCAAATCTACAATCGAGTATGAAGTGAAGGAAGAGGACGCAGCGAATGCCTCACTTGTTTCCATCCAGCCAGTGGCAAACATTGTACAAGTTGCAAAGAATTACCTCAATAGAAACAAGGCTGCCAAAAATGCCAATTATATACATTCAGGAGCCCTAAATTTGACGTGCCACTGGGAAGAAAAGATGGCCATAAACGGAACAAGGAATCTGCCACCACCATTCTTCAAAACCGGTGAGCTCCTCACCACTTTTGCCGCCAGAAACTTCGACGCCACAGATGTGGTGGCACTATCCGGTGCGCACACCTTCGGGAGAGCCCACTGTGGATCCTTCTTTGACAGGATCAACCAATCAGACCCACCCATTGAGGAGACCTTCGCCAACAATCTCAGGGCCACGTGTCCCACTAAAGACTCCACCAACACCACCGTGCTGGACGTTAGAACCCCCAATGTGTTCGATAATGTGTATTACGTCGACCTTCTGAACCGCCAGGGACTGTTTGTGTCGGACCAGGATCTGTTCAGTGATTCTAGGACAAAGGATGTGGTTCAATCCTTTGCTTCCGACCAGAAACTGTTCTTTGACAGGTTTGTTAGTGCTGTTGTCAAGTTGAGCCAGTTGGATGTGTTGACCGGAGAACAGGGACAGGTGCGTGCCAAATGCTCCCTCCCAAACACCAAGGAGAAGTCTCCGGTATCCTCTGTGGTGGAAGAGGTTGTGGATTTAACTAGTGACGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00423	129364	133514	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006952 defense response

GO:0006979 response to oxidative stress

GO:0009607 response to biotic stimulus

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000423s00024445.1	PF00407.14	Bet_v_1	3	145	2.20E-15
Glyur000423s00024445.1	PF00141.18	peroxidase	180	306	2.00E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.712
SRR1783600	control	19.673
SRR1783602	moderate drought stress	22.082
SRR1811619	moderate drought stress	22.372

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.378
DRR006520	Root Summer glycyrrhizin high producing strain	22.739
DRR006521	Root Winter glycyrrhizin high producing strain	14.158
DRR006522	Root Winter glycyrrhizin high producing strain	13.459
DRR006523	Root Summer glycyrrhizin low producing strain	26.269
DRR006524	Root Summer glycyrrhizin low producing strain	26.606
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.467

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.846
SRR2868004	Drought Stress (root)	60.421
SRR2967015	Control (root)	44.153

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.246
SRR9715740	Leaf	4.953
SRR9715741	Leaf	6.465
SRR9715739	Root	4.354
SRR9715742	Root	36.788
SRR9715743	Root	30.719

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.343
SRR8749028	MeJA induced 9h	0.186
SRR8749029	MeJA induced 9h	0.269
SRR8749030	Uninduced	0.056
SRR8749031	Uninduced	0.068
SRR8749032	Uninduced	0.133

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.476
SRR8400027	Control - Root	14.991