Gene detail information of Glyur000423s00024443 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16770.2 | 3.00E-73 | myb domain protein 9 |
| NR | BAC75671.1 | 2.20E-176 | transcription factor MYB101 [Lotus japonicus] |
| Swissprot | tr|Q8GWP0|MYB39_ARATH | 4.00E-77 | Transcription factor MYB39 |
| trEMBL | tr|Q84PP5|Q84PP5_LOTJA | 8.00E-177 | Transcription factor MYB101 {ECO:0000313|EMBL:BAC75671.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00423 | 112978 | 114441 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000423s00024443.1 | PF00249.26 | Myb_DNA-binding | 15 | 62 | 1.30E-13 |
| Glyur000423s00024443.1 | PF00249.26 | Myb_DNA-binding | 68 | 113 | 1.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.688 |
| SRR1783600 | control | 2.909 |
| SRR1783602 | moderate drought stress | 2.649 |
| SRR1811619 | moderate drought stress | 2.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.092 |
| SRR2868004 | Drought Stress (root) | 3.589 |
| SRR2967015 | Control (root) | 5.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.136 |
| SRR9715741 | Leaf | 0.377 |
| SRR9715739 | Root | 0.340 |
| SRR9715742 | Root | 0.611 |
| SRR9715743 | Root | 0.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.198 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.021 |
| SRR8400027 | Control - Root | 17.590 |