Gene detail

Gene detail information of Glyur000423s00024442

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16730.1	2.00E-126	Plant protein of unknown function (DUF827)
NR	KEH30676.1	0	WEB family plant protein [Medicago truncatula]
Swissprot	tr\|Q9LFE4\|Y5673_ARATH	0	WEB family protein At5g16730, chloroplastic (Precursor)
trEMBL	tr\|A0A072UMR5\|A0A072UMR5_MEDTR	0	WEB family plant protein {ECO:0000313\|EMBL:KEH30676.1}

Sequence

Transcript Sequence

>Glyur000423s00024442.1
AACACATCAGTGAGAGAGAAGAGAACGGTTAAGAAAGAAAGAGATTTTCTGGAGACACAGAAAATCAACTCAAAATTATTATTTTTTGGGGGTTTCTGCTCTGTAAATTCCCTCTNCTTCAACCCCACCACCCATCTTCTCCTTCCCAAGAGGAAAAAAAAAATCCAAATTCTATAACTTTGATCCAAAAAAATTGTTGGGTTTTCTTCTTTCTTACAATGTCAGAACTCTTAACATTCCTAATTCTGTAACTGACCCTTTCAGGAAAGGCACCAACTTTTTACTTTTTCTCTTGTTACTGAGACAACTTCCTCTTCCATGGCTTCAAAATCTAGATCAAGTTTATCTGAAAATTCCANCAAGTCATCACTGGCAACTCCAAGAGGCAGTAAAGGTGGCAAAGTGGTGTCCAAATCAGAATCTGATTCACCATCACCCTTGCCAAACTCACGTGTTCCTGTAGAACGATCACCACGATCTGTGAGCTCAAAGCCCACTGCTGAGCGGAAACCAGCAAGGCTTACCTCCACCCCACCTGATAAACAAGCCCCGAGAGCTGCAAAGGGTTCAGAATTGCAGAACCAGTTGAATCTAGCTCAAGAAGATCTAAAGAAAGCAAAGGAGCAGCTCCTTCAGGCTGAGAAGGAGAAGGTAAAAGCAAATGATGAGTTGAAAGAAGCACAGAGAGTGGCTGAGGAAGCGAATGAGAAGCTCAGGGAAGCATTGGTCGCTCAAAAGCGAGCTGAGGAGGAATCTGAGATCGAAAAATTCCGAGCTGTTGAATTGGAACAGGNTGGCATTGAAACTGTGAAGAAGAAGGAAGATGAATGGCAGAAAGAGCTCGAGAGTGCGAGGAACCAGCATGCCTTGGATGCGGCTGCTCTTCTCTCCGCCACTCAGGAGCTTCAGCAGGTTCAACAAGAACTTGCCATGGCTTGTGATGCTAAGAACCANGCATTGAGTCACGCTGATGATGCAACTAAAATTGCTGAGACTCATGCAGAGAAAGCAGAGATTTATTCAGCCGAGTTGACACGGTTGAAGGCCTTACTAGATTCAAAAGTAGAAACCGAGGCTAGTGAAAATGAGCTTGTATTGAAGTTGAAGACAGAGATAGAAGCTCTCAAGAAAGAACTTGAAAAGGCCAAGGGTTATGNTGAAAATTTGGCAGAGAAAGAAACTCATATTGAACAGCTTAATNTGGAGCTTGAAGCCGCGAAGATGGCTGAATCTTATGCACATAGTCTGCTAGAGGAGTGGAAGAAGAAAGTTGAGGAACTAGAAATGAGGGTTGAAGAAGCAAACAAGTTGGAGAGATCTGCTTCATTATCTTTGGAATCTGTAATGAAACAGCTAGAAGGAAGCAATGATTTGATGCATGATGCAGAATCTGAAGTTGCTACTCTTAAAGAAAAGGTAGGTTTGTTGGAAATGACAATTGGTAGACAAAGAGCAGATCTCGAGGATTCAGAATGTCGAATTGTTATGGCTAAGGAAGAAAATCTTGAGAAGTCAAAGAAGGTTGAGTCTCTCAAATCTGAACTTGAGACACTTAAGGAAGAGAAAGATCTGGCTTTGAGCAATGAACAGCTTGCAGCTTCTAGTGTGCAGACCCTATTGGAAGAGAAAAACAAACTTATCAATGAATTGGAGAATTCTAGGGATGAAGAAGAGAAGAGCAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTGTCTGCAGAAGCTAGGGAAGCCAAAGAAAATGTAATAAACAGCCAAGCTGAAAGGCAAAGCTACGAGACCCAGATCGAAGATTTAAGGTTAGTCTTGAAAGGCACTAATGAAAAATACGAGTCCATGCTCGATGATGCACGGCATGAAATTGATGTCCTTGTATGTAGCATTGAAAATTCTAAGAATGCCTATGAGAACTCCAAGGCTGAGTGGGAGCAGAGAGAACTTCACCTAGTAAGCCGCGTGAAGAAAACCGAAGAAGAGAACGTGTTCCTGGAAAAAGAAATAAATAGGTTGGTTCATTTGCTTAAAGAAACCGAGGAAGAAGCCAGTGTGAACAGGGAGGAAGAAGCTCAGTTGAAGGAAAATCTGAAGGAAGTTGAGGCCGAGACAATTCACCTGCAAGAGGCTCTTAAGGAAGTAATGGCCGAGAACATGAAATTGAAGGAGAATTTATTGGACAAAGAAAATGANCTGCAGAATGTTTTTCAAGAAAACGACGAACTCCAAGCTAGAGAAGCNGAATCTATTAAGAAGGTGGAGGAGTTATCGAAGCTGCTGGAAGAAGCTACAACCAGAAACCACGCCGAGGAAAACGGGGATCTCACAGACAGTGAGAAGGACTATGATTTGCTTCCTAAAGTAGTCGAATTCTCCGAAGAGAACGGACATGGAGGAGAAGACATTTCAAAGGTNGAGCTTTCGGTCGTCAACCATCAGGAGGGAGGACTCAAACACATCTCACAANAAGAAGAAGAAAGTACCTTGATTGACAAGGCTGAGAAAACCGAATCTCCCGAACCCGAGGATGCGAATGGGAAACCGAAGGAAGATGACGAGGGAAAAGAGAAGGATGATCCGGTTGAAGTTGAGTTCAAAATGTGGGAGAGCTGCAAGATAGAGAAAAAGGAGTTCTCCCCAGAGAGAGAAGAACCAGAGCCTGAGTCATTTGAAGAGGAAATGGACTCAAAGGTAATAGAAGAAGAAGGTGGTGGTGGTGGGAGCTTTGACAAGATAAATGGGACCACTGTTGTAACAACAGAGAACATTGATGAATCAAAACAACAATTGAAGAAGAAGAAAAAACCTTTGCTTGGAAAATTTGGAAGCCTGCTCAAGAAAAAGGGTGCTAGCAACAACCAGAAATAGAAGAACAAATACTACTATTCCAACTTTAAGAGGTATATTGAACATTCATTTTGTTTGCACGTACGTGTTTGCTTTTTGTTATTATTATTTTTTATTTTGCTTCTAAAAGAATAGAATTTTTTTACTGAATGACAAGGCTTGTAATATTGTTTAGGATTCAATNTTTTTTTTGGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00423	105903	109820	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000423s00024442.1	PF05701.6	WEMBL	84	514	2.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.492
SRR1783600	control	56.954
SRR1783602	moderate drought stress	53.309
SRR1811619	moderate drought stress	53.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.546
DRR006520	Root Summer glycyrrhizin high producing strain	42.058
DRR006521	Root Winter glycyrrhizin high producing strain	9.965
DRR006522	Root Winter glycyrrhizin high producing strain	9.436
DRR006523	Root Summer glycyrrhizin low producing strain	30.827
DRR006524	Root Summer glycyrrhizin low producing strain	30.620
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.281
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.494
SRR2868004	Drought Stress (root)	42.493
SRR2967015	Control (root)	47.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.600
SRR9715740	Leaf	18.969
SRR9715741	Leaf	13.499
SRR9715739	Root	2.408
SRR9715742	Root	21.804
SRR9715743	Root	16.813

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.089
SRR8749028	MeJA induced 9h	32.243
SRR8749029	MeJA induced 9h	31.328
SRR8749030	Uninduced	19.153
SRR8749031	Uninduced	14.075
SRR8749032	Uninduced	12.843

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.306
SRR8400027	Control - Root	67.250