Gene detail information of Glyur000423s00024437 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27600.1 | 4.00E-131 | pfkB-like carbohydrate kinase family protein |
| NR | XP_003607450.1 | 0 | Carbohydrate kinase-like protein [Medicago truncatula] |
| COG | YP_001837915.1 | 6.00E-35 | PfkB family carbohydrate kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| trEMBL | tr|G7JSU0|G7JSU0_MEDTR | 0 | PfkB family carbohydrate kinase {ECO:0000313|EMBL:AES89647.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00423 | 75160 | 80201 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000423s00024437.1 | PF00294.19 | PfkB | 161 | 271 | 2.00E-13 |
| Glyur000423s00024437.1 | PF00294.19 | PfkB | 274 | 388 | 7.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.373 |
| SRR1783600 | control | 6.254 |
| SRR1783602 | moderate drought stress | 6.070 |
| SRR1811619 | moderate drought stress | 6.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.690 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.091 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.382 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.459 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.449 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.591 |
| SRR2868004 | Drought Stress (root) | 13.772 |
| SRR2967015 | Control (root) | 15.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 37.759 |
| SRR9715740 | Leaf | 43.193 |
| SRR9715741 | Leaf | 34.213 |
| SRR9715739 | Root | 6.094 |
| SRR9715742 | Root | 7.951 |
| SRR9715743 | Root | 8.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.572 |
| SRR8749028 | MeJA induced 9h | 15.476 |
| SRR8749029 | MeJA induced 9h | 11.397 |
| SRR8749030 | Uninduced | 11.986 |
| SRR8749031 | Uninduced | 11.762 |
| SRR8749032 | Uninduced | 13.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.338 |
| SRR8400027 | Control - Root | 12.988 |