Gene detail

Gene detail information of Glyur000423s00024436.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75340.2	3.00E-39	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_004505582.1	4.83E-180	PREDICTED: zinc finger CCCH domain-containing protein 16-like [Cicer arietinum]
Swissprot	tr\|Q5Z807\|C3H46_ORYSJ	1.00E-47	Zinc finger CCCH domain-containing protein 46
trEMBL	tr\|K7LSG8\|K7LSG8_SOYBN	3.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01905.2}

Sequence

Transcript Sequence

>Glyur000423s00024436.1
AAAAATGGGACATTTGCAGGAAAAAAAAAAGAAAAGAAAAAACGTGACTAAAAAGAAATGATACACTATTTTTTTTTCTTTTTTTCTTCGGAAGAAAGAATTGGAACAGAGGGAGAAGTCGATTTTTAACTGAAGCGCTGTTGAAGAGAAGTGATTTTGGCTATCCTTTGAGGAAGCAGTAAATAGGCACGCGAGGGTTTTGTGTTTGTTCATAACAATGAGAGAAATCTGTAGAAACTTCCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGTAGATATATGCATGTACTCCAACAACCACGGAAATCTAATGTTCAGGGGTTTGGAGGACAGAGCACCTCTCACCAACAGCAAAATACAAATCCTTTTGGATTCGGGTCTCGCGCTGGCTCCGGCTCCGGCTCGCACCAACAGCAAAAGACCAATCCTTTTGGATTTGGTATGCAGAACAGCTCCCAGATAAATGGGAGCCCTCAATCTGAGTTCAAAACAAACCAATTCAAGCCTTTTGAGAACAAATGGAATCGACCTTCATCCAAACCCCAGAGTGGCACTTCACGTCAGTCTGATANCAATTCTCAACCAGTGAATCATAAATGCACAGATCCAGAGATCTGCAAGCGCCAGATTGTAGAAGATTTTGAGCAAGAGAAACCACTTTGGATACTTACATGCTATGGTCATTGCAAAGGTGCTCCCTGTGACATTGTTGAGAAAGAGAGAAACATACTAAAATCCAAGTTGGTCGAGTTTGAGAAACTACTTTCTGAACCCTACAAAATGCCACTGAATTCTTCTCCTGACATTCAAAAGTTCCAATCTAGTGGAGACAATGCAAATCCATTTTCACTCACCACTCAAAATAATGGTCCTTTATCTGTCTCAAGCTTTAGTCAACTGGGTGCTTCATTGAATGTGGGATTTGAAAGGCCCTCTTCCCCACTAATGAACAATCTGGTGCAGCCTACTCCCTTCGGAAGTGGAGGAAACTTCTTGACATCCAACACAACAAATCTATTTGGCAGTGGAGTCTCAAGTGCTCAAAGCAGCCNCTATTCTACACCAGTGGAGTTGACATTGTTTCCAGGTTCAACTTCCCAGTCCCAGCAATCATCCACTGCCTTCAATATCTCTAGCTCCAGTACAATGGTTCAGACAACATCAGATGTTGAGTTAAATAAGTCTCAAGTGGAGAATGTGTCCGGAGATGTCAGTATTTGGTTCAAAGAGAAATGGAATCCTGGAGAGATTCCGGAAGAAGCTCCTCCAGATGAATTTGTTCGGTAGACATCTGTATATTAGTATCTGAAACAGAGTAATCAATACTGTGTTGGCAAGATTAGTGTATGGTTAGGTGTATTTTAATAATTTTAGGTCCTTTCTTGGTTGAATCACAGAGATGGATAGCATATTAGATCACTTTGGTTTTACAGCACTTACTGGATGATTTTGTATCAAGTGATGAAACAAGAAGAAATGAGGAGNCAAAAGTAAAGCCTCGATTGCCTCTCACTTCAATGAGTTTCTCACTGCACTATCACGAGTTCATTGATATAGATTTCAATCCTCTTATTTATGTATCTTTTTTTATATGAAAAAACATGAGCATGAGGAGAGAGAAAGAGAGAGAGAGAGAGAAAATATGCATGTTTGTAAGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00423	67835	74681	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000423s00024436.1	PF00642.19	zf-CCCH	2	24	9.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.873
SRR1783600	control	19.886
SRR1783602	moderate drought stress	20.315
SRR1811619	moderate drought stress	19.995

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.446
DRR006520	Root Summer glycyrrhizin high producing strain	21.509
DRR006521	Root Winter glycyrrhizin high producing strain	17.554
DRR006522	Root Winter glycyrrhizin high producing strain	15.990
DRR006523	Root Summer glycyrrhizin low producing strain	27.953
DRR006524	Root Summer glycyrrhizin low producing strain	28.111
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.160
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.339

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.507
SRR2868004	Drought Stress (root)	18.633
SRR2967015	Control (root)	20.341

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.028
SRR9715740	Leaf	13.257
SRR9715741	Leaf	14.130
SRR9715739	Root	3.636
SRR9715742	Root	10.860
SRR9715743	Root	10.248

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.987
SRR8749028	MeJA induced 9h	18.856
SRR8749029	MeJA induced 9h	19.057
SRR8749030	Uninduced	12.333
SRR8749031	Uninduced	9.809
SRR8749032	Uninduced	10.479

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.462
SRR8400027	Control - Root	19.641