Gene detail

Gene detail information of Glyur000423s00024435

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32700.1	3.00E-72	PLATZ transcription factor family protein
NR	XP_003540084.1	1.57E-143	PREDICTED: uncharacterized protein LOC100810757 [Glycine max]
Swissprot	tr\|P0CB19\|Y3081_ARATH	4.00E-07	Uncharacterized protein At3g50808
trEMBL	tr\|I1LP57\|I1LP57_SOYBN	6.00E-144	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01890.4}

Sequence

Transcript Sequence

>Glyur000423s00024435.1
AACTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTCAAAAGCAGTACTATAGTTTGAGAAAGTTATCCTTTTTAGTTCTTCTTTCTTCCTCCAAATTAGCACTTAGTTGCTATGATAGAAGAGGATCCAAATAACCCACCATAACAGAAATCAAAACCCCCNAAAAAAAAATCATGGGAGGTGGAGGAGGTATCAATGAATTAGAAGGTGTTGTTGTGGAAGAAAAGGAAGAAGAAAACAAGTGGCCCCCATGGCTTCANCCACTTCTCCAAACAAGTTTCTTTGTTCAATGCAAAGTCCATGCAGATTCACACAAGAGCGAATGCAACATGTATTGCTTGGATTGTATGAATGGAGCCCTTTGTTNTGCTTGTTTGGCCTCCCACAAAGAACACAGAACAATTCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTGTCTGAGATACAGAAATTTCTGGACATAACAGGGGTCCAAACTTATATCATAAACAGTGCTAAGATTGTGTTCTTGAATGAAAGGCCTCAACCTAGGCCTGGTAAAGGGGTCACCAATACCTGCCAAGTCTGTGATCGCAGTCTCCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAGAAGTTCAGGAAGAACAAAAGGTTGTTGAGTAGGACAGATGGGTCTGATGGTGAAGAATCAATGAATGGCAATATCAGCAATAGAAGTGCCAGAAACAAAGTCCATAACTTTACACCTTCAACTCCACCCCCAACAGTGGTGAATTACAGAACAGCTAAGAGAAGGAAAGGTGTTCCACATAGAGCTCCAATGGGGGGAGGGATTATCATACAATACTACTAATAACGTTATATAGTGGTGTTCACTTTTCTGTCACTTACCAATCGATATCCATACGAGTAGTGAATCATCAAAATCATCCTTGGCATTGTAATACACTGTCAATTTTAGTCTCTGAAATTATTAATATTCTAAATCAATCTTTGAAATTGAAAATTCTCTATCACATTGGTCCTTTTGGAACAGTCGCTTTAGTTCTTGNAATTGTCCGATAGGGACTAATGTGATCCAGAATTTTCAATTTTAGAGACTAGTTTGGAATGATAATAATTTTAAAGACTAAGTTGATAGTGACTTACAATTTTANGGANTANATTGGTGATTCACTCATATTTATACCCAAGAAGATACAGCAGTTGTTGCCACTTCCTTAAAGTGGTTTCCTCAGAAAACATGCCTTTATATTTTACATAGTTGCAACACCTGAGCCCTGTTCCCTGAGGCCGGTGTTGGGAACAACTGCTCTATCTTAATGTATAGGAAAAAAAATACAATAGGGGAAGAAAAAAAAAAGAAAAGAAATACTATATGTTAGAAAGCAAATAATAATATAACATAGAGTGGGGAGTACTTTATGTTGGTATGTGATGCTAAATGTACATATAGTGGTTTGTAGAAAAGGAATTGTATAGCATCAAATTTGACAATAAAAAAAAAGTTATGAGTATATTAATTTTATTCCCTTGGTTTGGTACNTGACCATTGTCCTTGTCCTTTCAATGTTGAAAGTATATATGTCTTTGTTTGGCTGGTGGACGAGTGGTTTAAAACTTTAAAGTGATAGATTTATTGGCCTATGCTTCCCNTTTTCAGCTTTTGTAGATTGGTTTCTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00423	56431	59349	+

Gene family

Gene family	subfamily
Transcription Factors Family	PLATZ

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000423s00024435.1	PF04640.9	PLATZ	80	151	1.00E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.174
SRR1783600	control	25.420
SRR1783602	moderate drought stress	39.393
SRR1811619	moderate drought stress	38.616

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	75.497
DRR006520	Root Summer glycyrrhizin high producing strain	74.566
DRR006521	Root Winter glycyrrhizin high producing strain	61.004
DRR006522	Root Winter glycyrrhizin high producing strain	59.107
DRR006523	Root Summer glycyrrhizin low producing strain	129.013
DRR006524	Root Summer glycyrrhizin low producing strain	131.041
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.626
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.746

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.873
SRR2868004	Drought Stress (root)	74.308
SRR2967015	Control (root)	89.558

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.125
SRR9715740	Leaf	75.341
SRR9715741	Leaf	68.177
SRR9715739	Root	7.514
SRR9715742	Root	13.834
SRR9715743	Root	12.609

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.351
SRR8749028	MeJA induced 9h	17.680
SRR8749029	MeJA induced 9h	11.443
SRR8749030	Uninduced	5.643
SRR8749031	Uninduced	4.558
SRR8749032	Uninduced	8.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.051
SRR8400027	Control - Root	30.356