Gene detail information of Glyur000423s00024427 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22440.1 | 8.00E-08 | FRIGIDA-like protein |
| NR | XP_004506617.1 | 1.05E-102 | PREDICTED: nuclear anchorage protein 1-like [Cicer arietinum] |
| trEMBL | tr|K7LSG1|K7LSG1_SOYBN | 9.00E-92 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G01835.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00423 | 9172 | 21094 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000423s00024427.1 | PF07899.6 | Frigida | 11 | 258 | 3.30E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.667 |
| SRR1783600 | control | 9.641 |
| SRR1783602 | moderate drought stress | 11.753 |
| SRR1811619 | moderate drought stress | 11.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.247 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.249 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.323 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.515 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.565 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.026 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.057 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.170 |
| SRR2868004 | Drought Stress (root) | 5.136 |
| SRR2967015 | Control (root) | 5.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.780 |
| SRR9715740 | Leaf | 5.355 |
| SRR9715741 | Leaf | 5.307 |
| SRR9715739 | Root | 2.187 |
| SRR9715742 | Root | 9.104 |
| SRR9715743 | Root | 9.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.045 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.057 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.395 |
| SRR8400027 | Control - Root | 12.105 |