Gene detail

Gene detail information of Glyur000423s00024426

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20530.2	2.00E-133	prohibitin 6
NR	XP_004505579.1	0	PREDICTED: prohibitin-1, mitochondrial-like [Cicer arietinum]
COG	YP_002770974.1	1.00E-38	hypothetical protein BBR47_14930 [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q9SIL6\|PHB6_ARATH	3.00E-170	Prohibitin-6, mitochondrial
trEMBL	tr\|G7JSU6\|G7JSU6_MEDTR	0	Prohibitin complex protein {ECO:0000313\|EMBL:AES89653.1}

Sequence

Transcript Sequence

>Glyur000423s00024426.1
GTACCCGACCCATACAAGCTAAAACGCGGCCCGAACCCGAAGGAGGTGGAAGCGGTGTATATTTCTCATTCTCATAAGCCCTAAAAACCCTACAACGCTTCAACCCTCTTTCTCCCAAGCGGAAACCTCTACAACCATTTTCTGCACAAGATGAATTTCAACAACGTGAAGGTCCCAAAGGTTCCTGGTGGTGGAATCTCTGCTTTGCTTAAAGTTAGTATCATTGGTGGGCTTGCTGTNTATGGGGCTACAAACAGCTTGTACAATGTTGAGGGTGGCCATAGAGCCATTGTCTTCAACCGTGTTGTTGGTGTCAAGGATAAGGTCTATCCTGAAGGAACCCATATTATGATTCCATGGTTTGAGAGGCCCGTGATCTATGATGTTCGTGCACGACCTCATTTAGTGGAGAGCACTTCAGGAAGCCGTGATCTCCAAATGGTGAAAATTGGACTTAGAGTNCTTACCCGTCCAGTGCCAGACCAATTACCAACAATTTATCGATCTCTGGGTGAGAATTATAACGAAAGGGTCCTGCCTTCTATTATACATGAAACTCTCAAAGCTGTGGTTGCACAGTATAATGCCAGTCAGCTCATTACTCAGAGAGAGGCTGTTAGTCGAGAAATAAGGAAGATATTGACTGCAAGGGCCTCTCAGTTCAATATTGCATTGGATGATGTGTCAATCACAAGTTTGACATTTGGGAGGGAATTCACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAGGAAGCTGAGAGAGCGAAATTCGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTTATTAGAGCACAGGGAGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCTATTGCCAATAACCCTGCATTTATCACCTTAAGGAAAATTGAAGCTGCAAGGGAAATCGCTCAAACAATTTCAAGTGCTGCCAACAAGGTTTACTTGAATTCAGATGATCTCTTACTGAATCTTCAGGCTTTGAATTTGGAGCCCAGTGGAAAGAAATAGTTGTGCTGTGTGGCTGAATTCACTAAACCTCTCTTTTTTCTAACATTGTCATTCGTTTTCACTTGTATGTCTATCAACTGTTCAAAGATGAGATTTAGCTTTGCAAACTGAAAATTTGACAAACTTATGGTCAATTGTCTTTAAATGGAACATGTGAGACAAGGGAGGTTCAAATTCAATCAGGTTTTATCTGTTTTCAGTAGTTCTGTTCTTGAATGGACTCCAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00423	6100	9326	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000423s00024426.1	PF01145.20	Band_7	39	216	2.90E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.351
SRR1783600	control	22.330
SRR1783602	moderate drought stress	13.967
SRR1811619	moderate drought stress	13.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.253
DRR006520	Root Summer glycyrrhizin high producing strain	41.451
DRR006521	Root Winter glycyrrhizin high producing strain	38.001
DRR006522	Root Winter glycyrrhizin high producing strain	37.410
DRR006523	Root Summer glycyrrhizin low producing strain	28.541
DRR006524	Root Summer glycyrrhizin low producing strain	28.466
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.826
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.612

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	97.369
SRR2868004	Drought Stress (root)	57.842
SRR2967015	Control (root)	55.175

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.999
SRR9715740	Leaf	25.462
SRR9715741	Leaf	15.360
SRR9715739	Root	12.931
SRR9715742	Root	22.186
SRR9715743	Root	20.235

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	149.262
SRR8749028	MeJA induced 9h	71.974
SRR8749029	MeJA induced 9h	94.145
SRR8749030	Uninduced	8.724
SRR8749031	Uninduced	7.802
SRR8749032	Uninduced	13.127

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.170
SRR8400027	Control - Root	54.745