Gene detail information of Glyur000422s00020651 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22330.1 | 0 | putative mitochondrial RNA helicase 2 |
| NR | XP_006602283.1 | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like isoform X6 [Glycine max] |
| COG | YP_004367002.1 | 3.00E-103 | DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884] |
| Swissprot | tr|Q9LUW5|RH53_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 53 |
| trEMBL | tr|I1N132|I1N132_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G14670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00422 | 164132 | 169591 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000422s00020651.1 | PF00270.24 | DEAD | 120 | 288 | 2.20E-42 |
| Glyur000422s00020651.1 | PF00271.26 | Helicase_C | 361 | 434 | 7.40E-26 |
| Glyur000422s00020651.2 | PF00270.24 | DEAD | 120 | 288 | 2.20E-42 |
| Glyur000422s00020651.2 | PF00271.26 | Helicase_C | 361 | 434 | 7.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.690 |
| SRR1783600 | control | 5.754 |
| SRR1783602 | moderate drought stress | 5.297 |
| SRR1811619 | moderate drought stress | 4.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.165 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.296 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.207 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.049 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.421 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.950 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.710 |
| SRR2868004 | Drought Stress (root) | 4.977 |
| SRR2967015 | Control (root) | 5.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.211 |
| SRR9715740 | Leaf | 0.862 |
| SRR9715741 | Leaf | 1.093 |
| SRR9715739 | Root | 4.434 |
| SRR9715742 | Root | 5.917 |
| SRR9715743 | Root | 5.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.900 |
| SRR8749028 | MeJA induced 9h | 6.126 |
| SRR8749029 | MeJA induced 9h | 5.949 |
| SRR8749030 | Uninduced | 0.222 |
| SRR8749031 | Uninduced | 0.092 |
| SRR8749032 | Uninduced | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.836 |
| SRR8400027 | Control - Root | 4.907 |