Gene detail information of Glyur000422s00020648 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18210.2 | 3.00E-47 | Calcium-binding EF-hand family protein |
| NR | CAC43238.1 | 3.24E-94 | calcium binding protein [Sesbania rostrata] |
| COG | YP_007118813.1 | 1.00E-20 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9M7R0|ALL8_OLEEU | 5.00E-60 | Calcium-binding allergen Ole e 8 |
| trEMBL | tr|Q93YA8|Q93YA8_SESRO | 1.00E-94 | Calcium binding protein {ECO:0000313|EMBL:CAC43238.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00422 | 144013 | 144528 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000422s00020648.1 | PF13499.1 | EF-hand_7 | 28 | 88 | 7.20E-15 |
| Glyur000422s00020648.1 | PF13499.1 | EF-hand_7 | 100 | 160 | 7.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 152.255 |
| SRR1783600 | control | 152.086 |
| SRR1783602 | moderate drought stress | 61.191 |
| SRR1811619 | moderate drought stress | 61.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 841.645 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 821.864 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.704 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2281.754 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2250.860 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 893.890 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 873.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 172.758 |
| SRR2868004 | Drought Stress (root) | 205.413 |
| SRR2967015 | Control (root) | 284.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3841.888 |
| SRR9715740 | Leaf | 2139.794 |
| SRR9715741 | Leaf | 4154.402 |
| SRR9715739 | Root | 1187.433 |
| SRR9715742 | Root | 1847.503 |
| SRR9715743 | Root | 1660.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1242.087 |
| SRR8749028 | MeJA induced 9h | 839.180 |
| SRR8749029 | MeJA induced 9h | 1407.677 |
| SRR8749030 | Uninduced | 1929.218 |
| SRR8749031 | Uninduced | 1197.800 |
| SRR8749032 | Uninduced | 1689.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 184.088 |
| SRR8400027 | Control - Root | 317.130 |