Gene detail information of Glyur000422s00020646.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G13370.1 | 0 | chromatin remodeling 5 |
| NR | XP_006575632.1 | 0 | PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine max] |
| COG | YP_004462436.1 | 8.00E-70 | SNF2-like protein [Mahella australiensis 50-1 BON] |
| Swissprot | tr|F4IV99|CHR5_ARATH | 0 | Protein CHROMATIN REMODELING 5 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|I1JIZ0|I1JIZ0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00422 | 122469 | 140655 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000422s00020646.1 | PF00385.19 | Chromo | 529 | 583 | 1.80E-14 |
| Glyur000422s00020646.1 | PF00176.18 | SNF2_N | 623 | 909 | 3.90E-71 |
| Glyur000422s00020646.1 | PF00271.26 | Helicase_C | 971 | 1050 | 3.50E-15 |
| Glyur000422s00020646.1 | PF13907.1 | DUF4208 | 1550 | 1648 | 7.90E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.077 |
| SRR1783600 | control | 10.149 |
| SRR1783602 | moderate drought stress | 12.851 |
| SRR1811619 | moderate drought stress | 12.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.773 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.625 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.044 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.778 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.981 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.186 |
| SRR2868004 | Drought Stress (root) | 22.656 |
| SRR2967015 | Control (root) | 23.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.320 |
| SRR9715740 | Leaf | 12.502 |
| SRR9715741 | Leaf | 13.571 |
| SRR9715739 | Root | 1.110 |
| SRR9715742 | Root | 10.750 |
| SRR9715743 | Root | 9.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.010 |
| SRR8749028 | MeJA induced 9h | 15.399 |
| SRR8749029 | MeJA induced 9h | 4.760 |
| SRR8749030 | Uninduced | 7.050 |
| SRR8749031 | Uninduced | 5.795 |
| SRR8749032 | Uninduced | 3.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.307 |
| SRR8400027 | Control - Root | 17.984 |