Gene detail

Gene detail information of Glyur000422s00020645.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G13360.2	0	alanine:glyoxylate aminotransferase
NR	XP_006584642.1	0	PREDICTED: enzymatic resistance protein isoform X1 [Glycine max]
COG	YP_002362023.1	3.00E-157	class V aminotransferase [Methylocella silvestris BL2]
Swissprot	tr\|Q56YA5\|SGAT_ARATH	0	Serine--glyoxylate aminotransferase
trEMBL	tr\|C1IGP4\|C1IGP4_VIGRA	0	Alanine:glyoxylate aminotransferase {ECO:0000313\|EMBL:ACE63506.1}

Sequence

Transcript Sequence

>Glyur000422s00020645.1
AAAACTATTTATATTATGTGAGTTTGTCTTGTCAATATATATTATNANGATAATGATAGAACTTAGTATCTATTAAATAAATTAAAAAGAAATGAAGGGGCAAGAAAATTTGGAGAATGGATAAATTGTTAGAGATGAAGCTCAAAAGATGTGTTGATATAATGTATAGCATTTGAGAGCAAATCCAATTATCCAAGCCAGAACTGAGTGTTCCCCTCTTCATCCATTCTCAGCCTCAAGGTTCTCTTCTCAGGTTCTCCCTCTTATCTACTACTTGGGGCATCACTTGGCCCCACCTTAGCACTTGATTGGTTCTCCCGCGCTCTTGATCATAAAAAAAAATGAATTTTTACATTTACACTTTTTATATAATAAAGTTCTGCTAAGAGCAGAAGGCACTGACACAGCTCTTCCTTGTGCCATATTTCACCAAACCATCTGAAGATTCTCCCATCCAAGTGGTTCTTTGGTGGGAAAAGCCAAGAATTGCTTGAATCCAAAGAGGTTGCAATTTCAAGGAGGGGAAGATGGATTATGTCAATGGACCAGGAAGAAACCAGCTCTTTGTTCCGGGGCCAGTTAACATACCTGAGCAGGTCATCCGGGCAATGAACCGAAACAACGAGGACTACCGTTCTCCAGCAATTCCGGCTCTGACAAAAACTCTGCTTGAGGATGTCAAGAAGATTTTCAAGACTACTACTGGAATCCCATTTCTTATCCCTACAACTGGTACTGGTGCTTGGGAGAGTGCTCTGACAAACACATTGTCTCCTGGGGATCGCATTGTGTCTTTCCTGATTGGCCAATTCAGTTTGCTTTGGATTGATCAGCAGCAACGCCTTAACTTCAATGTTGATGTTGTAGAAAGTGACTGGGGCCAGGGTGCCAATCTTGACATTCTGGAATCAAAAATTGCTTCGGATACTGCACACACTATAAAGGCAATTTGCATTGTTCACAATGAGACAGCAACTGGGGTTACCAATAACTTGGCCAAAGTGAGACAAATTCTTGATGCCTACCAGCATCCAGCCCTCATCCTTGTTGATGGAGTGTCTTCCATCTGTGCTCTCGATTTCCGCATGGATGAATGGGGGGTAGATGTGGCCATAACTGGCTCCCAGAAAGCCCTTTCCCTTCCCACTGGGATAGGCATTGTGGTTGCAGGCCCTAAAGCCATTGAGGCTTCAAAATCTGCTAGATCACTTAGAGTCTTCTTTGACTGGAAGGACTACCTGAAATTCTACCAGATGGGTACCTATTGGCCATACACTCCTTCCATTCAGTTGCTGTATGGTCTGAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGAAAATGTGATTGCGAGGCACAGTCGTTTAGGTAGAGCAACCAGACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTTCAGTGACACAGTGACTGCTGTTGTTGTTCCTCCTTACATTGACAGTGCNGAAGTAGTTAGAAGGGCATGGAAGAGATACAACATGAGCTTAGGTTTGGGACTAAACAAAGTTGCTGGGAAGGTATTCAGAATCGGGCACCTTGGCAGCATGAATGAGGTGCAACTCTTGGGTTGTCTTGCTGGTGTGGAGATGATACTCAAAGATGTGGGTTACCCTGTAAAGCTTGGGAGTGGAGTTGGTGCTGCCAGTGCTTACTTACAGAACACTATTCCCCTGATCCCTTCCAGGATTTGAGTCACAATCNACTCTTGTAATTACTTCTCTTTCTGCCCTTTCAGGATATCTGTAAAATACATATTATGCAACTCTCTTGAAGATGATGAACATATTCGCTACTTTTGGTTTTCAATGCATTGTTTCTTTCATTGTCCTGTATGTCAGAAATTACTAAATTTAATTTAATGCCCTCATTTGAGAATTGAGANTGTGTTATGGACATCAAACTCATCTTCAAGTCACTAGGCTAAGAGTACACATATTCTTAGGAGTAAATACTAAACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00422	115654	120602	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00830	AGXT	EC:2.6.1.44 2.6.1.45 2.6.1.51	Carbon metabolism	map01200
			Glyoxylate and dicarboxylate metabolism	map00630
			Methane metabolism	map00680
			Alanine, aspartate and glutamate metabolism	map00250
			Glycine, serine and threonine metabolism	map00260
			Peroxisome	map04146

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000422s00020645.1	PF00266.14	Aminotran_5	12	324	8.30E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.106
SRR1783600	control	0.110
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.486
DRR006520	Root Summer glycyrrhizin high producing strain	0.527
DRR006521	Root Winter glycyrrhizin high producing strain	0.669
DRR006522	Root Winter glycyrrhizin high producing strain	0.707
DRR006523	Root Summer glycyrrhizin low producing strain	0.271
DRR006524	Root Summer glycyrrhizin low producing strain	0.232
DRR006525	Leaf Summer glycyrrhizin high producing strain	971.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	966.450

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.075
SRR2868004	Drought Stress (root)	9.180
SRR2967015	Control (root)	1.126

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	840.910
SRR9715740	Leaf	1160.209
SRR9715741	Leaf	765.743
SRR9715739	Root	0.136
SRR9715742	Root	1.031
SRR9715743	Root	0.675

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.107
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.125
SRR8400027	Control - Root	1.371