Gene detail

Gene detail information of Glyur000422s00020637

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60500.3	2.00E-125	3'-5'-exoribonuclease family protein
NR	XP_004497540.1	0	PREDICTED: exosome complex component RRP45-like isoform X1 [Cicer arietinum]
COG	YP_184046.1	5.00E-54	exosome complex RNA-binding protein Rrp42 [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q9M209\|CER7_ARATH	6.00E-154	Protein ECERIFERUM 7
trEMBL	tr\|G7IP72\|G7IP72_MEDTR	0	Exosome complex exonuclease RRP41 {ECO:0000313\|EMBL:AES64157.1}

Sequence

Transcript Sequence

>Glyur000422s00020637.1
TTTCGTTAAGCAGAGAGGCATGGAGCAGAGATTAGCTAATTGTTGGCGGTTGACGGTTAATGAAAAGAAATTCATTGAAAGTGCTCTGCTTTCAGAGCTTCGAGTAGACGGTCGTGGCCCCTTGGAGTATCGCAAGCTGAGCATCAAGTTTGGGAGGGATGATGGGTCCGCCGAGGTCCAATTGGGTGAGACGCGTGTGATGAGTTTTGTGAGTNCTGAACTTGTGCAGCCTTACAGAGATAGGCCCAATGAAGGCACGCTTTCCATCTTCACCAAGTTTGCTCCCATGGCCGATCCTTCCTTTCAGCCTGGCTGTCCTGGAGAATCTGCCATTGAGTTAGGACGTGTTATAGACCGCGGTTTACGGGAAAGCAGAGCCATTGACACTGAGTCCCTCTGCATTCTTTCTGCCAAGCTTGTCTGGGCCATTCGCATTGATATCCATATACTGGANAATGCTGGGAATCTTGTTGATGCTGCAAATATTGCTGCATTGGCTTCTCTCTTGACATTCCNGAAGCCTGAATGCTCTTTGGGGGGAGAAGATGGTCAGCAAGTTGTAGTGCATCCTCCTGAGGTGCGTGAGCCACTCCCTTTGATTATACATCATCTTCCTATTGCTGTCACCTTTGGGTTTTTCAGTAATGAAAATCTTGTGGTTATGGATCCGACATACCATGAAGAGGCTGTAATGACCAGACGCATGACTGCAACGCTTAATGCAAATGGTGATGTTTGTGCCATTCAAAAGGCTGGGGGGCAGGGAGTCTTTCAGCGGTTTATTATGCACTGCTTGAAACTTGCTCATGTTAAAGCTGGTGATATTACAACTAAGATAAAGGATGCAGTTGAAAAACACAACACTGAAAGGGCACTACAGAAGATTAAACGTCATTCTTCTTCTGTTGCCGTGGATGTATGTGGAACCACTGCCAGATTATCGGAAAAACAAAATCAATTAGATGCTGGTAAAGAAGGACCGTCAGCTCCTAGTAAACAAAAGGATGCGAGACGGGAGACTGAGCCGGAAGAAACAGCACAGGAAATTAAGACAGATTCTTTACCAATTGACACAGCTCCAACTGATGGGCAGAATAATGAAGGTAAGACTCTGAAGGATGCTGTCAAGCCCAAGAACAGGAGCAAAAAAAGAGCATTTTCCAATAACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00422	55241	57234	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000422s00020637.1	PF01138.16	RNase_PH	36	166	7.60E-20
Glyur000422s00020637.1	PF03725.10	RNase_PH_C	197	263	4.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.726
SRR1783600	control	1.645
SRR1783602	moderate drought stress	2.615
SRR1811619	moderate drought stress	2.512

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.776
DRR006520	Root Summer glycyrrhizin high producing strain	2.977
DRR006521	Root Winter glycyrrhizin high producing strain	2.466
DRR006522	Root Winter glycyrrhizin high producing strain	2.591
DRR006523	Root Summer glycyrrhizin low producing strain	1.856
DRR006524	Root Summer glycyrrhizin low producing strain	2.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.863
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.966

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.774
SRR2868004	Drought Stress (root)	2.772
SRR2967015	Control (root)	3.782

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.597
SRR9715740	Leaf	0.241
SRR9715741	Leaf	0.541
SRR9715739	Root	0.479
SRR9715742	Root	0.745
SRR9715743	Root	1.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.331
SRR8749028	MeJA induced 9h	5.795
SRR8749029	MeJA induced 9h	5.791
SRR8749030	Uninduced	2.394
SRR8749031	Uninduced	0.418
SRR8749032	Uninduced	0.868

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.394
SRR8400027	Control - Root	2.194