Gene detail information of Glyur000422s00020636 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G36980.1 | 4.00E-51 | |
| NR | XP_004515668.1 | 1.13E-87 | PREDICTED: transmembrane protein 50 homolog [Cicer arietinum] |
| trEMBL | tr|B7FGM3|B7FGM3_MEDTR | 1.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:AFK37493.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00422 | 50078 | 53090 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000422s00020636.1 | PF05255.6 | UPF0220 | 10 | 133 | 3.10E-28 |
| Glyur000422s00020636.2 | PF05255.6 | UPF0220 | 10 | 124 | 3.50E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.575 |
| SRR1783600 | control | 29.695 |
| SRR1783602 | moderate drought stress | 45.431 |
| SRR1811619 | moderate drought stress | 44.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 61.924 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 60.580 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 90.457 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 88.308 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.009 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.603 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.874 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 58.371 |
| SRR2868004 | Drought Stress (root) | 74.571 |
| SRR2967015 | Control (root) | 76.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.693 |
| SRR9715740 | Leaf | 54.029 |
| SRR9715741 | Leaf | 44.773 |
| SRR9715739 | Root | 82.057 |
| SRR9715742 | Root | 60.983 |
| SRR9715743 | Root | 66.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.001 |
| SRR8749028 | MeJA induced 9h | 30.567 |
| SRR8749029 | MeJA induced 9h | 28.264 |
| SRR8749030 | Uninduced | 39.034 |
| SRR8749031 | Uninduced | 21.436 |
| SRR8749032 | Uninduced | 34.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 68.219 |
| SRR8400027 | Control - Root | 69.657 |