Gene detail

Gene detail information of Glyur000422s00020635.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77800.2	0	PHD finger family protein
NR	XP_004515666.1	0	PREDICTED: uncharacterized protein LOC101488965 isoform X3 [Cicer arietinum]
Swissprot	tr\|Q9C5X4\|ATX1_ARATH	8.00E-30	Histone-lysine N-methyltransferase ATX1
trEMBL	tr\|I1KA40\|I1KA40_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G11370.1}

Sequence

Transcript Sequence

>Glyur000422s00020635.1
CACCCCTCCAACAGCCTGCAAAAAACGCGAATTCTCTCTCTCTTTCTCTCTCGTCTTTTATTCTTCTCGCTCCTCTCACTCTCGCCCGTTTTTTTTTTCTTTCTTTCTCTCTCTAGCCCCTTGTTGAACTGCACGAAACAAAAAATATTAACGAGTCTAAGAAAACGGATCCCAAACAATAACTGAACCCTAACCCTAGAAAACGGGGCTTATCCTCTTCTTCTTCCCCCTTCTCCGTTCGTTCCTTTTTCACTGCGAAACGGAAATCAAAACCAAAGTTCGATTGGGTTTCATTACTGTCTCTCCACTGGTGCATGCTACATAGGGTTCGTCTCCACAGGTTGTTATCACGATAGGGTTTCGGTTTTTCTATGATGGAATGCTTTCGTTCCTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCGGTGGAAGAACATGGCCGAAGAAGGTGGTGTCTCCGCCGACGAGAGGACCTCTCCGGCCGATTTTCCGGCGGACCGACCGGAGATTCCCGCCGTGTTTGAGATTGATTACTTCTCCCAGGCTAGGAAAGCGCTCAGCGAGCGCTCGCCTTTCGATGCTACCGAGGAAACGTCGACTTCTGCTGCGGNTACTCTGCCGACAGGGTTGGCNAGTCTGTTGAACCGCCACGGCGATAACCGGAGGCGCCAGAAGAAGTCTCATTCCGGCGGTGGGGATAAGAAGAAGAAGAAGAAATCGTCTTCTTCTCGGGCGAACGAGAAGTCTCGCGGTTACAACATTTGGGCTGAAACAGAGGAGTACTTCAGGGACGTGACCTTGTCTGATATAGACANCTTGTTCGAGTTATCTTCTTCTTCTAAGGCTTCTAGTTTAGCTTCTCGTGAGTGTTTCAGGATTCCGCTTTTGGGAAATGCTCAAAGGTTCAATGTAGTTAGTGCTGGTTGTTGTGAGGATGAAAAAAAGCCTGCTCCAATTGACAATGTAGTTATTAGTANTGAGGATGAGAAGAAGGCTGGTGAAGAGGTGAACAATGAGTTAATTGAAAATGTTGCTGCTGCTGCTGAAGGAGCTTTGCCTCAGGATGATGAAAAAGATCGCGATGTTTCTGATTCCTGTGTTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGGTTTCATTAACCTCAGAGCGCCCTTCGAAGAAAAGGAAGCTTTTGGGTGGCGATGCTGGCTTGGAGAAAGTGTTAATGACCAGTCCCTGTGATGGGGACCAACCGTTTTGTCATTATTGCGGCAGGGGAGACTCTGGNACTGGCAGAGATTCCTCCAATCGGTTGATAGTCTGCGCTTCGTGTAAAGTTGCGGTTCATCGGAAGTGCTACGGCGTGGAGGAAGACGTGGATGGTGCCTGGGTGTGCTCTTGGTGTAAGCGGAAGGGCGATGATGTCGATGACTCNGTGAATCCATGTGTTCTCTGCCCAAAGAAGGGTGGCGCTTTAAAACCAGTTAATAATAGCAGCACTGTGGAAGGTGTTGGGTCTGCCGCNCAGTTTGTGCACTTGTTTTGTTGTCTGTGGACGCCCGAGGTTTACATTGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGGAGGCATCAAGGAAACCCGTAGAAAATTGGTGTGTAATGTTTGCAAAGTGAAATGCGGTGCATGTGTCCGGTGTAGTCATGGAACCTGCAGAAGTTCTTTCCATCCTTTATGTGCTAGGGAAGCTAGGCATAGAATGGAGGTTTGGGCAAAGTACGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACATTCAGATCTACAAGAGAACAGAAGCATATTGCCTCTGGGAGGCCCTATTGTCCCTGGCAGTGAATCTTCAGAAGCCAATGACCTTCCAGTGACATTGCCAATGAGCAGCGAACGCTGTGTGAAAATTGACTGTGGCAATGGAGAGGTTGTGTCTGATGGTAATCCAGACACATTGAACCATAATGATGAACCACCAGATGGAGGATTGTCTGATTGTAGGTTTAGTACTCACAATATGTTGGGATGTGGTGATGTGCCACAACATAATATTGGAGTGGCAGGGAGAACCAATGAGAATGTTGATGCCTCTGACTCCCTCAGTTTTGCACTGGTTTTAAAGAAGCTGATAGATCGAGGAAAAGTTGATGTAAAAGATGTAGCACTGGAGATTGGCATTTCACCAGATACATTGACAGCAAATATCAACGAAGCTTGTATGGCCCCTGATTTGCGACACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTGGTGCATTTCATAAAGGTTTAAAACTCAAATTTAAACCAGCCAATGCATCTACGGATGAAAGTGGANCCGCAGATGGTTCTGATACTTTACCAATATCAGATTCAGGCTTGCTGGATCCTGTCGCGGTTAAGTCAGTACCACCAAGGAGAAGAACTATCAGTCACATTAGGATTTTGAAGGATAATAAAGTTGTATGTTCGTCTGAGGGAGTTACTAGTGAGAATGGGATACCAATTGACAACAAGTTCATAAATGTAACCAGGTCCGAGGATATTTTTCATGAAGTTCAAGGCAATGCTGATGAACCCAACAAATCCAGCTTATCTGCACGTGTTTCAGAACAAAAGTCTTCTGCTTGTTTGCAGAATGCTACAATGCTTTCTGATCAGCACTGTCCGGCTCATTCTGCTTCAGTACCTCCTGATTCTGGTTTCATAAAGATAGAAGCAATCTCTAGTTACATTCACCCTTACATCAACAAGAAATTGCTGCAGATTCATAATGGGTTGCCCTTGGAGGATGTTATAGCAGGTTTAAATGGTAATGGAAATTCTTTGGTTGAATCCTCTGGGGCTAATGGTTGCTCAAGTAGCCAAAATCAGCAATTAACTTGCATTGACGTTTCCAAGCATGATCAAGTAAAGATGGAGCAGTTGGGTAGGGATGAAAAAATGCGACTTTTGGAAATTTATCCAGAAGAGGATTTGGAGGGGGAACTTATATATTTTCAGTATAGATTATTGCAGAATGAAGTTGCAAAGAAGAGGCTTACTGATAACTTAATCTTCAATGTTACTAAGAGTTTGCCACAGGAGATTGATAAAGCACATCAGCAAAGATGGGATGCTGTGATTGTTAATCAATATCTACGTGATCTTAGGGAGGCAAAAAAACAGGGTAGAAAAGAAAGAAAGCACAAGGAAGCACAGGNAGTGTTGGCTGCAGCAACTGCTGCCGCAGCCGCATCTTCTAGGGTTTCTTCTTTCCGAAAAGACACCATAGATGAATCTGTGCAAAAGGAGAATTTGTTGAAGCTGGATGCTTTAAGTGGACGAACTGGTGCTTGTTCTCAGCCAATGCCACGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACTAGGGCTTCATCAGAGAAATATTCGGATTTTTGCCTGCCAACCTCAGATTTTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGATTTGAGACAATGTTAAATCCTATCCTAGTCTGCTCTGGCTGCAAGGTTGCAGTGCACTTGGATTGCTATCGTAGTTTGAAAGAAACGACGGGTCCATGGTACTGTGAATTATGTGAAGATATTTCATCTAGAAGTTCTGGGGCATCTGCTATAAATTTCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCTCTCTGCGGTGGTACTACTGGTGCTTTTAGGAAGTCGTCTGATGGTCAATGGGTTCATGCATTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAGAAGAGGACAAAAAGATGCTATTGAAGGAATGGAGACTGTGCCAAAAGGAGTTGACGTTTGTTGCATCTGCCACCGCAAGCATGGNGTATGCATGAAGTGTTGCTATGGCCATTGCCAGACCACATTCCATCCGTCCTGTGCTAGAAGTGCTGGTTTGTTCATGAANGTGAGGACTACTGGTGGCAAGCTGCAACACAAGGCTTACTGTGAAAAACACAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATTGAAGAGCTAAAAAGCATCAAGCAAATTCGGGTTGAACTTGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTGGTTCTGTGCTCACATGACATACTTGCCTTTAAGAGAGATCACGTTGCTAGGTCTNTGCTGGTTCGTAGTCCTTTCATTCTTCCAGACGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGCGAACACAGAAGGATACAGATCGTGCAGTGATGTGCTCCAAAGATCAGATGATGTAACTGTGGATAGCTCAGTTTCTGCTAAGCACCNTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCACAAAGTCATTATAACCACAAGGTTCNGGAGAGGATGCAATTTTCTGGCAAACAGATTCCTCATAGAGCTTCCGCTATGTCACGAAATATTTCGGATGAGGGTGGANGGAGATCCAAAGCTAGAAAGCATGCTGAAACGTTTGGAAAAGAGCTTGTTATGACGTCCGATGAAGCATCTATGAAGAATTCAAGGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCAGTCTAACGAGGATGTATATGCTAATGGACCAGGGGAACAGGACGGGTAGAGTGTTGGATCCCAGCTCGGTCAGCCTGGTTTTTTATTTTGCTCATGAGGCTGACATCCACAATAGACGATGCCATACCATGCCATTTTTGCACATGAAGTTGTATTTTTGAGCATGGCAAAATGTAGGGACAGGGCTCTGGTCACTGTATTGTTGCAGAACGTTGCATTCTGCTCAGGCGAGGTGAAGTTTTGTTAGCATTGTTGTATATTCGTTATGAGAGTAAGCTGTACAGTGGATGAGCATTTCTTGCATTTACTTGTATTGGAAGGGCATGCATTCCGTTTTTATGGACACACTCTGTGAAGGGGCGGAACAGAAGCATTCCCTCTTGTAACCATACAAAAGGGAAGATCAGGAAATCACCTGTTTTTATGTAAAGTTGATGTGTACATATTATGACAGTCGTATTAATTCTGAAAAGGGCTCGTGCTTGGCATCAGATTCACCGGGCATATAAATTATGTAACCTCCTACCTCCTTATTTTGTTTTTCTTATACTGCATTTCATTTGG

Protein Sequence

>Glyur000422s00020635.1
MLSFLCTLLLPAMTGDRCHRWKNMAEEGGVSADERTSPADFPADRPEIPAVFEIDYFSQARKALSERSPFDATEETSTSAAXTLPTGLASLLNRHGDNRRRQKKSHSGGGDKKKKKKSSSSRANEKSRGYNIWAETEEYFRDVTLSDIDXLFELSSSSKASSLASRECFRIPLLGNAQRFNVVSAGCCEDEKKPAPIDNVVISXEDEKKAGEEVNNELIENVAAAAEGALPQDDEKDRDVSDSCVSLEWFLGCRNKVSLTSERPSKKRKLLGGDAGLEKVLMTSPCDGDQPFCHYCGRGDSGTGRDSSNRLIVCASCKVAVHRKCYGVEEDVDGAWVCSWCKRKGDDVDDSVNPCVLCPKKGGALKPVNNSSTVEGVGSAAQFVHLFCCLWTPEVYIDDLKKMEPVMNVGGIKETRRKLVCNVCKVKCGACVRCSHGTCRSSFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLQENRSILPLGGPIVPGSESSEANDLPVTLPMSSERCVKIDCGNGEVVSDGNPDTLNHNDEPPDGGLSDCRFSTHNMLGCGDVPQHNIGVAGRTNENVDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANINEACMAPDLRHKIVNWLKAHVYTGAFHKGLKLKFKPANASTDESGXADGSDTLPISDSGLLDPVAVKSVPPRRRTISHIRILKDNKVVCSSEGVTSENGIPIDNKFINVTRSEDIFHEVQGNADEPNKSSLSARVSEQKSSACLQNATMLSDQHCPAHSASVPPDSGFIKIEAISSYIHPYINKKLLQIHNGLPLEDVIAGLNGNGNSLVESSGANGCSSSQNQQLTCIDVSKHDQVKMEQLGRDEKMRLLEIYPEEDLEGELIYFQYRLLQNEVAKKRLTDNLIFNVTKSLPQEIDKAHQQRWDAVIVNQYLRDLREAKKQGRKERKHKEAQXVLAAATAAAAASSRVSSFRKDTIDESVQKENLLKLDALSGRTGACSQPMPRAKETLSRVAVTRASSEKYSDFCLPTSDFSKEQRKSCDICRRFETMLNPILVCSGCKVAVHLDCYRSLKETTGPWYCELCEDISSRSSGASAINFWEKPYFVAECALCGGTTGAFRKSSDGQWVHAFCAEWVFESTFRRGQKDAIEGMETVPKGVDVCCICHRKHGVCMKCCYGHCQTTFHPSCARSAGLFMXVRTTGGKLQHKAYCEKHSLEQKAKAETQKHGIEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSXLVRSPFILPDGSSESATTSLKANTEGYRSCSDVLQRSDDVTVDSSVSAKHXVRVAVSMDTDPKLDDDCSTSQSHYNHKVXERMQFSGKQIPHRASAMSRNISDEGGXRSKARKHAETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDVYANGPGEQDG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00422	35576	47466	-

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000422s00020635.1	PF13831.1	PHD_2	309	342	8.20E-11
Glyur000422s00020635.1	PF13832.1	zf-HC5HC2H_2	354	475	1.10E-22
Glyur000422s00020635.1	PF13831.1	PHD_2	1048	1081	1.90E-12
Glyur000422s00020635.1	PF13832.1	zf-HC5HC2H_2	1103	1210	5.80E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.976
SRR1783600	control	13.143
SRR1783602	moderate drought stress	17.714
SRR1811619	moderate drought stress	17.625

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.630
DRR006520	Root Summer glycyrrhizin high producing strain	22.551
DRR006521	Root Winter glycyrrhizin high producing strain	26.872
DRR006522	Root Winter glycyrrhizin high producing strain	26.400
DRR006523	Root Summer glycyrrhizin low producing strain	28.505
DRR006524	Root Summer glycyrrhizin low producing strain	28.501
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.024
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.871
SRR2868004	Drought Stress (root)	39.434
SRR2967015	Control (root)	43.429

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.222
SRR9715740	Leaf	38.780
SRR9715741	Leaf	36.774
SRR9715739	Root	4.621
SRR9715742	Root	31.058
SRR9715743	Root	28.831

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.658
SRR8749028	MeJA induced 9h	23.840
SRR8749029	MeJA induced 9h	10.119
SRR8749030	Uninduced	17.201
SRR8749031	Uninduced	14.408
SRR8749032	Uninduced	10.487

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.634
SRR8400027	Control - Root	30.955