Gene detail

Gene detail information of Glyur000422s00020633

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77810.2	7.00E-152	Galactosyltransferase family protein
NR	XP_004515661.1	0	PREDICTED: beta-1,3-galactosyltransferase 7-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q6NQB7\|B3GT7_ARATH	0	Beta-1,3-galactosyltransferase 7
trEMBL	tr\|G7J458\|G7J458_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK45036.1}

Sequence

Transcript Sequence

>Glyur000422s00020633.1
CGCCAATAACAATAATGACACAGACTTGCGTTTCTGCATAGACTAGTTGTAGCAGTCCTTAGATTCATTTAAGACCAATTCCTCTTTTTGACATTCCCAGCAAAAGGAGCAAAGTTACCTATCATTAAATTAAACNCCTTGTTTTCTTCATCTCCCAATCTGAATGAAGAACAACTTTTCCGAGAAGATGAAGAGTCGTCCCTCTACCAAAATCTCTGCAAAATGGATTCCCATTTTCTCTGTCTTCTCCTTCATGCTTGGCATGCTCATCACAACCAGGATGTGGGAGCCACCTGAATCAAACGGTGTGATAATTTCGAAGCATCAGCGTGATCAAGAACTGCAAAAGCAGGAACAACCTAAGGACGAAATGAAGGAGTTGTACAAAACCCATGAAGCCATTAAAGAGCTAGACAAGCAAGTTTCCATGCTGCAGATGGAATTAGCAGCAGCANGGGGTTCTCGTGAAGGCAACTCAAATGGCTCAGCCAACACTTCCGGGGAAGGCTCTCCTCCTAGGAAGAAGGCTTTTATAGTGATTGGGATAAACACAGCTTTCAGTGAACAACTTCTTCGATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGCCACAGTGCAACTTCTAACAGCATTCTAGACCGAGCTATTGATTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTGGAACATGTTGAAGGGTATCATGAGCTGTCTGCAAAGACAAAGATTTTCTTCTCTACTGCAGTTGCATTATGGGATGCTGATTTCTATGTCAAAGTGGATGACGATGTCCATGTCAACTTAGGTGTCCTGGCAGCAACCCTTGCTCGTCACCGGTNGAAACCCAGGGTCTACATTGGCTGTATGAAATCTGGACCTGTTCTTTCTCGAAAGGATGTCAAGTACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCAGACATGCAACTGGGCAGATATATGCAATCTCCAAGGATTTGGCCACTTACATTTCCATCAACCAGCCAATTTTACATAAATATGCCAATGAAGATGTCTCACTTGGTTCATGGTTCATTGGTCTTGAAGTTGAGCATATTGATGACCGCAGTATGTGTTGTGGAACCCCTCCAGACTGTGAGTGGAAGGCACAGGCAGGGAACATATGTGTTGCATCGTTTGATTGGAGCTGCAGTGGAATCTGCAAGTCGGTGGAGAAGATTAAATATGTCCACTCAAAATGTGGTGAAGGGGATGGAGCTGTTTGGAGTGCATTGTTTTAGATTAGATTTGATTCAAAGGAAGATGGTTNTTACTGGTATGAAGAAGAGGGGCCTAATTGTTTAATGGCAGCTAGANCAAATGCAGTTTTTTGGATTTGAGAATGAGAATTCTCTGCAAATAGATACAACATGAAAGATCTCATCAACCATACAAAGCTGGGAGGCAAGGCTGGTTGCTTGGTTGATCATTTTTGTGGAAGCTGTTCCCTTCAGTTAACAATTGCTTGAATGTGGAAGGATTTTAAGGAAATAGATCTATTCACCATACCCTTCAAGTCTTAATTTATGACTAGTATACACGGTGTAATAGAACAAGGGCCTATTCTATGTTTATAATAATTTTGTTAATTTGTTACTTTTATGCACTGTTTTTTCTTGTAGTTGTGTGAGATTGGATTTTTGTTCTTTGTAACGAAAAGTAATGTATTGATAGATCTGATAATATGTTGAAATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00422	996	6064	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function
GO:0008378 galactosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000422s00020633.1	PF13334.1	DUF4094	18	97	3.90E-24
Glyur000422s00020633.1	PF01762.16	Galactosyl_T	141	317	9.90E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.492
SRR1783600	control	13.686
SRR1783602	moderate drought stress	11.698
SRR1811619	moderate drought stress	11.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.886
DRR006520	Root Summer glycyrrhizin high producing strain	36.315
DRR006521	Root Winter glycyrrhizin high producing strain	12.950
DRR006522	Root Winter glycyrrhizin high producing strain	12.767
DRR006523	Root Summer glycyrrhizin low producing strain	40.620
DRR006524	Root Summer glycyrrhizin low producing strain	40.518
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.982
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.812

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.242
SRR2868004	Drought Stress (root)	52.633
SRR2967015	Control (root)	48.136

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.826
SRR9715740	Leaf	18.379
SRR9715741	Leaf	37.731
SRR9715739	Root	12.125
SRR9715742	Root	23.646
SRR9715743	Root	21.358

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.245
SRR8749028	MeJA induced 9h	83.752
SRR8749029	MeJA induced 9h	41.017
SRR8749030	Uninduced	61.626
SRR8749031	Uninduced	31.407
SRR8749032	Uninduced	18.725

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.618
SRR8400027	Control - Root	32.803