Gene detail

Gene detail information of Glyur000421s00024807

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41130.1	0	Esterase/lipase/thioesterase family protein
NR	XP_004492989.1	0	PREDICTED: acyltransferase-like protein At3g26840, chloroplastic-like [Cicer arietinum]
COG	YP_005320938.1	4.00E-31	putative acyltransferase [Saprospira grandis str. Lewin]
Swissprot	tr\|Q9LW26\|Y3684_ARATH	0	Acyltransferase-like protein At3g26840, chloroplastic (Precursor)
trEMBL	tr\|G7KW54\|G7KW54_MEDTR	0	Esterase/lipase/thioesterase family protein {ECO:0000313\|EMBL:AES80654.1}

Sequence

Transcript Sequence

>Glyur000421s00024807.1
ATTACTTGTATTCCAAACTTTACAGGGATTGATGGCGTGGGACTTGGACTTATTTCGCATCATCAGAAATTGGGAAGGATTTTTGATTTGTGGTGCTTGCATATTCCAGTTGCGGATCGAACACCATTTACAGACCTTGTGAAATTAGTTGAGAGAACAGTTAGGTCAGAAAATNAACGTTCACCAAATAGACCCATATATCTTGTTGGAGAATCTTTAGGAGGGTGCCTCGCGCTGGCTGTTGCAGCCCNTAACCCTGATCTTGATCTTGTACTAATTTTGGCAAATCCAGGTACTTCGTTTANCAGGTCACAGTGGCAACTTCTAACACCATTGTTGGAAGCTTTGCCTGGCTCACTCGCTCCTATCCTGCCTAACACACTTAATTTGACAGCAGGTGACCCTCTGAGGATGGTGTTGGATAACGTGATGAAAGGACTTCCTCAACAAAATACAGCTAGAGAGCTAATAGAGGATTTTACTACTTTCTCATCATCTCTTCCTGTTCTTGCTGACATATTACCAAAAGAAACACTTCTGTGGAAACTAAAGATGCTTAAGTCAGCTTCTGCATATGCCAATTCACGCCTTTATGCCATCAAAGCTCAGACTTTGATACTTTGCAGTGGAAATGATCAATTACTACCTAGTCAAGAGGAAGGTGAAAGACTACTTCAGTTGCTGCCTAAATGCGAGCTTCGTAAATTTGATGATAGTGGTCATTTCCTATTCCTGGAAGGCAGCATCGACCTGGTAACAATCATCAAGAGCACTTCTTTCTACCGCCGTGGCAAGTATCATGACTATGTTTCAGATTTCATACCACCTACATCTTATGAAGCCAAAAAAGTAATAGAATCAAACAGTTTGATTAATGCAATCACAAGTGCTGTAATGATTTCAACTTTGGAGGATGGGACAATTGTTAAAGGCCTTGCTGGAATTCCTTCAGAGGGGCCTGTTTTGTTTGTTGGGTACCACATGCTGCTAGGATTGGAATTAGTTCCCTTGGTTTCCCGAATTTTTATGGAAAGAAATATCCTTGTTCGAGGGGTAGCACATCCCATGATTTTTATGAGAAGGAAAAATGGAAAATTGCCAGATATTTCTTCTTTTGACTCATTCAGAATCTTGGGCGCTGTTCCTGTAGCACCAACTAACTTCTTCAAGCTTTTCTCTTCCAAGTCTCATATCCTATTATATCCTGGAGGGATGCGTGAGGCTCTTCATAGGAAGGGTGAAGAGTACAAGTTATTCTGGCCTGAACAATCCGAGTTTGTCAGGATGGCAGCCAGATTTGGAGCCAAAATTGTACCTTTTGGTGCTGTTGGAGAAGATGATCTTGGTCAAGTAGTTATTGATTATGATGACTTGGTGAAGATTCCTTACTTTAGGTCTGAAATAGAAAGCCTTACAAAGGAGGCTATGAATTTGAGATCTGATACTGGTGGTGAGGTGGCAAATCAACAAATCCACATGCCTGGAATTTTGCCTAAAATTCCGGGTCGATTTTACTATTATTTTGGAAAACCAATTGAAACAGAAGGAAGGAGACAGGAACTTAGGGACAGGGAGAAATCTCAAGAGTTATATTTACAAGTGAAATCTGAGGTTGAGAGCTGTATTGCTTATTTAAAGGAGAAACGGGAAAGCGACCCTTACAGAAGTATACTGTCTCGGCTATTATACCAAGCCACACATGGTTTTTCTTCTGACATTCCAACATTTGAAATTTGATTGTTCTGCACAAAGGATGGTAATGTTCTAATTGATCCAGAGAGGCCTGCCTGTGTATTCCATAGGTCTCAAACATAAGAGAGGCAAAGCACTGTAAATTTGCCAATAGTTTCAAGCATTGTTTTCTGGCCAGAAGGCATGATTCTTCAGAGAAGGTTGGAGACCCATTGTGCAATTCTTCCTAGTTTAAATCAATAAGCGGCAAATGCAAATAATAAATTATTGGGGGAAAGGAACTCAACTACACAAGTTGTATCTAAATTTGTCATTTGTGATTCTTGGACAATGGCATCTTGAAGTATGTACAGAGGCAGGAAGATATCATTCCCTGCCATAATTAAACTACATCTCTCTCTAAATATATATACATACATACACATTGATGCCAACTCGATAAAATTCTTGGGGTGTATCAGATTCTACTCCGAGCTATTGAAAATTCCTAAAATTGACAGAGACATCTGCAATTGAAAATATCTGTGAGAACAGTTTTGAAAGCATATTTTGTTCTTGAATACCTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00421	49470	57354	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000421s00024807.1	PF12697.2	Abhydrolase_6	43	246	6.70E-17
Glyur000421s00024807.1	PF03982.8	DAGAT	378	451	5.60E-06
Glyur000421s00024807.2	PF12697.2	Abhydrolase_6	50	109	8.20E-07
Glyur000421s00024807.2	PF03982.8	DAGAT	241	314	3.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.384
SRR1783600	control	4.494
SRR1783602	moderate drought stress	3.023
SRR1811619	moderate drought stress	2.710

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.458
DRR006520	Root Summer glycyrrhizin high producing strain	3.427
DRR006521	Root Winter glycyrrhizin high producing strain	19.294
DRR006522	Root Winter glycyrrhizin high producing strain	19.613
DRR006523	Root Summer glycyrrhizin low producing strain	8.290
DRR006524	Root Summer glycyrrhizin low producing strain	8.429
DRR006525	Leaf Summer glycyrrhizin high producing strain	89.440
DRR006526	Leaf Summer glycyrrhizin high producing strain	88.265

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.481
SRR2868004	Drought Stress (root)	32.186
SRR2967015	Control (root)	30.969

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	82.714
SRR9715740	Leaf	71.983
SRR9715741	Leaf	77.479
SRR9715739	Root	1.200
SRR9715742	Root	4.110
SRR9715743	Root	3.565

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	104.429
SRR8749028	MeJA induced 9h	91.337
SRR8749029	MeJA induced 9h	103.370
SRR8749030	Uninduced	70.050
SRR8749031	Uninduced	79.452
SRR8749032	Uninduced	65.678

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.844
SRR8400027	Control - Root	15.304