Gene detail

Gene detail information of Glyur000420s00021436

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34190.1	0	Xanthine/uracil permease family protein
NR	XP_008443418.1	0	PREDICTED: nucleobase-ascorbate transporter 2 [Cucumis melo]
COG	YP_003736672.1	7.00E-56	xanthine/uracil permease family protein [Halalkalicoccus jeotgali B3]
Swissprot	tr\|Q94C70\|NAT2_ARATH	0	Nucleobase-ascorbate transporter 2
trEMBL	tr\|G7LJF6\|G7LJF6_MEDTR	0	Nucleobase-ascorbate transporter-like protein {ECO:0000313\|EMBL:AET04261.1}

Sequence

Transcript Sequence

>Glyur000420s00021436.1
AGAACTGCTAACTTAGTTGAAGAAAGAAAGACAGAGCTCAGTGCTAAAGTAGTGTGGGGTGCAAAGTGCAATTTCTCTTGCTCTGTTCTCACCCTACTAATCTGAATCTCTCTTCTATTCTGCACTCTATCCTTAAACATAATCTCTCTTGCTCACATAATCTGTTGTGGGCATTTTTTCTTTCTGTCAGAATTTTTAGCCTTCTTCCCTGTCGCTGAATCAATCTAGTTTCCTCATTCACACTTTCTATCTGGGAGGATCAAAGTGTCTATCTTTTTTTTTTCCTTCCTCTGGAGCTGGTCTGTTTCTTGTACTTCATAATAATTTGGAAGCTAGAGGAAGAGTTGCAAAGTGAGGCAGTGAATCATGGCAGCTATAAAGCCAGAGGAGATAAGTCACCCACCAATGGACCAACTTCAGGGCTTAGAGTACTGTATAGATTCAAACCCATCTTGGGTGGAGACAATAGCTCTGGGTTTCCAGCATTACATTTTGGCCTTAGGAACTGCTGTGATGATTCCTTCATTTCTTGATGATAAAGTGAGGGTGGTACAGACTCTGCTTTTTGTTGAAGGAATTAATACACTTCTGCAGACACTGTTTGGAACCCGGTTACCAACGGTAATAGGAGGATCATATGCATTCATGGTCCCCATTGTATCCATAATTCGTGACCCGTCTTTCGCAATGATAGAGGACCCACATTTGAGATTTCTTAACACCATGAGAGCAGTCCAAGGTGCGCTAATAGTAGCATCAAGCATACAAATTATTCTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGGTTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCATTAGTTGGTTTTGGATTATTTGACAGAGGTTTCCCTATGGTTGGGACTTGTGTTGAAATTGGGATTCCCATGCTAATCTTTCTTATCTCAGCAAGTGGAGCATACAAACACCGCCCAGAGTTAACCCAACGTAGTTGCAGGACAGACAAGGCTAATCTCATTTCTTCTGCACCATGGATAAAGATTCCATACCCTCTTGAGTGGGGTGCCCCTACATTTGATGCTGGCCATTCTTTTGGAATGATGGCTGCTGTCTTGGTCACATTAATTGAGTCAACTGGGGCGTTCAAAGCTGCATCACGTCTAGCAAGTGCCACACCACCTCCTGCTCATGTCCTGAGCCGTGGCATTGAGAATGTGGGGCTTCTAGGAAGCAATCGTATCGGCAGCCGAAGGGTCATTCAAGTTTCTGCCGGCTTTATGATATTCTTCTCAATGTTAGGCAAATTTGGAGCTTTGTTTGCATCAATACCATTCCCCATTTTTGCTGCTGTATACTGTGTTTTGTTTGGTCTTGTGGCTTCTGTAGGGCTATCATTTTTGCAATTCACCAACATGAATTCAATGAGGAACCTCTTTGTTGTTGGCGTTGCCCTCTTCTTAGGTTTGTCCATTCCTGAGTATTTCAGAGAATACACAATCAGGGCCCTTCATGGTCCTGCTCATACCAAGGCTGGATGGTTCAATGATTTCCTAAATACTATCTTCTATTCTTCCCCAACTGTGGCATTGATTGTTGCTGTATTCTTGGACAACACTCTTGACTATAAGGATAGCGCCAAAGATAGGGGAATGCCATGGTGGGCTAAGTTTAGAGCATTTAAAGCAGATAGTAGGAATGAAGAGTTCTACTCCCTCCCTTTCAACCTTAACCGGTTCTTCCCTCCATCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00420	136551	140949	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000420s00021436.1	PF00860.15	Xan_ur_permease	32	177	7.30E-14
Glyur000420s00021436.1	PF00860.15	Xan_ur_permease	277	369	1.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.256
SRR1783600	control	4.041
SRR1783602	moderate drought stress	2.530
SRR1811619	moderate drought stress	2.645

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.135
DRR006520	Root Summer glycyrrhizin high producing strain	7.053
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.493
DRR006524	Root Summer glycyrrhizin low producing strain	3.159
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.506
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.593

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.790
SRR2868004	Drought Stress (root)	5.877
SRR2967015	Control (root)	7.512

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.365
SRR9715740	Leaf	0.096
SRR9715741	Leaf	0.122
SRR9715739	Root	3.059
SRR9715742	Root	3.668
SRR9715743	Root	3.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.755
SRR8749028	MeJA induced 9h	5.064
SRR8749029	MeJA induced 9h	6.483
SRR8749030	Uninduced	0.099
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.585
SRR8400027	Control - Root	8.144