Gene detail information of Glyur000420s00021435 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05830.1 | 1.00E-23 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004504291.1 | 5.77E-170 | PREDICTED: uncharacterized protein LOC101496453 [Cicer arietinum] |
| trEMBL | tr|G7LJG0|G7LJG0_MEDTR | 5.00E-164 | RING/FYVE/PHD zinc finger protein {ECO:0000313|EMBL:AET04265.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00420 | 128156 | 132270 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000420s00021435.1 | PF12906.2 | RINGv | 181 | 243 | 1.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.311 |
| SRR1783600 | control | 8.393 |
| SRR1783602 | moderate drought stress | 6.968 |
| SRR1811619 | moderate drought stress | 6.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.970 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.938 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.653 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.914 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.575 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.215 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.866 |
| SRR2868004 | Drought Stress (root) | 19.641 |
| SRR2967015 | Control (root) | 22.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.120 |
| SRR9715740 | Leaf | 7.685 |
| SRR9715741 | Leaf | 7.191 |
| SRR9715739 | Root | 3.018 |
| SRR9715742 | Root | 10.760 |
| SRR9715743 | Root | 9.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.326 |
| SRR8749028 | MeJA induced 9h | 7.400 |
| SRR8749029 | MeJA induced 9h | 5.395 |
| SRR8749030 | Uninduced | 4.408 |
| SRR8749031 | Uninduced | 4.161 |
| SRR8749032 | Uninduced | 2.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.884 |
| SRR8400027 | Control - Root | 23.422 |