Gene detail

Gene detail information of Glyur000420s00021433

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18760.1	7.00E-99	receptor like protein 51
NR	XP_004504290.1	0	PREDICTED: receptor-like protein kinase 5-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-22	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LHP4\|RCH2_ARATH	8.00E-24	Receptor-like protein kinase 2 (Precursor)
trEMBL	tr\|G7LJG3\|G7LJG3_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AET04268.1}

Sequence

Transcript Sequence

>Glyur000420s00021433.1
ATGAAACCATCATCACCACCTCCATTACTTCTTCTCATTCTCCTCTTCCTCTTCCCCACCACCATCACCTCAGTTTCTCCACCTCTCCCACCCACGTCCTCACCATCTTCTCCTTCCACTTCTACTCTTGACCCAAACCAGCTCAAGGCCCTGCAATCTCTCCACNTCCCCACCTCCAAGGACCCTTGTTCCCAACAAACTTCCCTCCACAATGCAACACTCTGCGATTCCTCCAAACCCTTCCGCCACCTCATTTCCCTGCGCCTCACCAACTGCTCCACCTACGTTTCTCTCTCCTACAATGCCCTCAAGTCCCTCTCCACCCTCCAATCCCTTCAACTCCTCGATTGCCCCAACATTTCCCCTCCCATTCACTTCCCTCCCCAACTCATTTCCTCTCTCCGCTCCTTCACCTGCATCAACAGCTTCCGCAAGNTCTCAGGTGTACGGCTCTCTCACCTCGCAAACCTCACCGATCTCACTGTTTCTAATGTTCCAGTTAAAGCTTCTGGTCCTTACGTTGTGCTTGCCCACATGAACAAGCTCAAAACTTTGACCATTTCCCATGCCAACCTCACTGGTTACCTCCCAAAACACATCCATTCCAACCTTACCCATGTTGATTTTTCTGGCAACAAGCTCAAAGGAAGCATACCCACTTCCATTACCATGCTGGATAGCCTTCAAATTTTGAATCTTTCATCTAATGGGTTCAAGGGTGAGATACCCTCTACCTTAGGGGACTTGATTTCATTGAAAAATCTTTCCTTGGCCTCGAATTCGTTTTCGGGGTCTATTCCGGATTCTATATCTGCCATACCCGGTTTGGTTCACATGGATCTTAGTTCAAACCAGCTCAATGGGACCATTCCAAAGTTCATTTCAGAAATGAGGAATCTTNAGCACTTGAATCTTGCTAACAATAACTTTCGTGGGGTTGTGCCATTCAACTCGAGTTTCATCAAAAGGTTGGCAGTGTTCAAGGTTGGTGGGAACAGCAACTTGTGTTATAACCATTCGGTTCTGTCTTCAAAACTGAAGCTTGAGATTGCTCCTTGTGATAAGTATGGGATGCCATTGTCACCTCCACCTGCAAAGGATTCTTCTGATGATGATAGTAGTGATTCGGATTATGATGACAGTAGTGATGATGGTGGTAGTAGCAGCCACAAGAGAGAGCATCATCATGGGCCAAATAAAGTGGTTCTTGGTGTGGCAATTGCTCTATCTTCCATTGTCTTTCTGATTGTCTTCCTAATCCTGTGCGCAAAGTGCTGTCGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00420	119889	121172	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000420s00021433.1	PF13855.1	LRR_8	202	261	2.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.693
SRR1783600	control	5.712
SRR1783602	moderate drought stress	6.057
SRR1811619	moderate drought stress	6.003

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.491
DRR006520	Root Summer glycyrrhizin high producing strain	7.073
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.840
DRR006524	Root Summer glycyrrhizin low producing strain	2.725
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.850
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.972

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.051
SRR2868004	Drought Stress (root)	5.216
SRR2967015	Control (root)	5.449

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.338
SRR9715740	Leaf	0.053
SRR9715741	Leaf	0.406
SRR9715739	Root	1.246
SRR9715742	Root	1.351
SRR9715743	Root	0.770

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.847
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.071
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.114
SRR8400027	Control - Root	3.409