Gene detail information of Glyur000420s00021430 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45760.1 | 4.00E-112 | Transducin/WD40 repeat-like superfamily protein |
| NR | KEH20679.1 | 0 | transducin/WD-like repeat-protein [Medicago truncatula] |
| trEMBL | tr|A0A072TT37|A0A072TT37_MEDTR | 0 | Transducin/WD-like repeat-protein {ECO:0000313|EMBL:KEH20679.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00420 | 102260 | 108349 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000420s00021430.1 | PF00400.27 | WD40 | 22 | 56 | 0.00021 |
| Glyur000420s00021430.1 | PF00400.27 | WD40 | 159 | 191 | 0.0015 |
| Glyur000420s00021430.1 | PF00400.27 | WD40 | 298 | 334 | 4.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.154 |
| SRR1783600 | control | 12.074 |
| SRR1783602 | moderate drought stress | 19.350 |
| SRR1811619 | moderate drought stress | 19.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.718 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.809 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.636 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.585 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.554 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.147 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.584 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.614 |
| SRR2868004 | Drought Stress (root) | 16.457 |
| SRR2967015 | Control (root) | 15.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.026 |
| SRR9715740 | Leaf | 7.232 |
| SRR9715741 | Leaf | 6.783 |
| SRR9715739 | Root | 7.478 |
| SRR9715742 | Root | 8.956 |
| SRR9715743 | Root | 9.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.976 |
| SRR8749028 | MeJA induced 9h | 15.768 |
| SRR8749029 | MeJA induced 9h | 26.285 |
| SRR8749030 | Uninduced | 10.434 |
| SRR8749031 | Uninduced | 8.718 |
| SRR8749032 | Uninduced | 11.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.267 |
| SRR8400027 | Control - Root | 20.765 |