Gene detail information of Glyur000420s00021428 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19810.1 | 7.00E-82 | Protein of unknown function (DUF177) |
| NR | XP_004504286.1 | 0 | PREDICTED: uncharacterized protein LOC101494701 isoform X1 [Cicer arietinum] |
| COG | YP_006720564.1 | 5.00E-14 | hypothetical protein Gmet_1596 [Geobacter metallireducens GS-15] |
| trEMBL | tr|G7LJG7|G7LJG7_MEDTR | 5.00E-163 | DUF177 domain protein {ECO:0000313|EMBL:AET04272.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00420 | 89880 | 93363 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000420s00021428.1 | PF02620.12 | DUF177 | 173 | 318 | 7.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.579 |
| SRR1783600 | control | 8.821 |
| SRR1783602 | moderate drought stress | 7.138 |
| SRR1811619 | moderate drought stress | 7.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.436 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.831 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.432 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.333 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.440 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.074 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.718 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.706 |
| SRR2868004 | Drought Stress (root) | 8.574 |
| SRR2967015 | Control (root) | 7.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.233 |
| SRR9715740 | Leaf | 16.427 |
| SRR9715741 | Leaf | 12.119 |
| SRR9715739 | Root | 3.494 |
| SRR9715742 | Root | 7.361 |
| SRR9715743 | Root | 7.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.102 |
| SRR8749028 | MeJA induced 9h | 6.181 |
| SRR8749029 | MeJA induced 9h | 6.324 |
| SRR8749030 | Uninduced | 1.697 |
| SRR8749031 | Uninduced | 1.016 |
| SRR8749032 | Uninduced | 0.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.171 |
| SRR8400027 | Control - Root | 15.049 |