Gene detail information of Glyur000420s00021427 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42760.1 | 2.00E-27 | |
| NR | XP_007159478.1 | 3.90E-99 | hypothetical protein PHAVU_002G240700g [Phaseolus vulgaris] |
| trEMBL | tr|V7CMN9|V7CMN9_PHAVU | 1.00E-99 | Uncharacterized protein {ECO:0000313|EMBL:ESW31472.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00420 | 87422 | 88126 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000420s00021427.1 | PF07939.6 | DUF1685 | 131 | 164 | 4.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.948 |
| SRR1783600 | control | 5.162 |
| SRR1783602 | moderate drought stress | 7.692 |
| SRR1811619 | moderate drought stress | 7.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.393 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.247 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.778 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.757 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.461 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.831 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.777 |
| SRR2868004 | Drought Stress (root) | 12.621 |
| SRR2967015 | Control (root) | 20.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 84.248 |
| SRR9715740 | Leaf | 67.071 |
| SRR9715741 | Leaf | 95.388 |
| SRR9715739 | Root | 8.909 |
| SRR9715742 | Root | 59.056 |
| SRR9715743 | Root | 51.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.073 |
| SRR8749028 | MeJA induced 9h | 41.241 |
| SRR8749029 | MeJA induced 9h | 32.233 |
| SRR8749030 | Uninduced | 46.180 |
| SRR8749031 | Uninduced | 76.475 |
| SRR8749032 | Uninduced | 47.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.689 |
| SRR8400027 | Control - Root | 30.869 |