Gene detail

Gene detail information of Glyur000420s00021423.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29280.1	3.00E-59	WRKY DNA-binding protein 65
NR	XP_006585175.1	1.31E-123	PREDICTED: probable WRKY transcription factor 65 isoform X1 [Glycine max]
Swissprot	tr\|Q9LP56\|WRK65_ARATH	7.00E-80	Probable WRKY transcription factor 65
trEMBL	tr\|V7CMU7\|V7CMU7_PHAVU	4.00E-119	Uncharacterized protein {ECO:0000313\|EMBL:ESW31474.1}

Sequence

Transcript Sequence

>Glyur000420s00021423.1
AATAAACAAAGACCATAGAGCTAGCGTAACCAATCTGTCAACATGAATCCCCATTTTTAAAGGGCATTCCCCATTCTCTCACTCACCTCCTTCTCTTTCTTTATTTGTCGTCTTTGCCTTCTAATATTGATGATCTGTGTGTAATCTAGCTAGCTATAATCCATTTCCATGCTTTAATTAGCTAACCACATTAATCATCACAATCAACAAATATATATCTCCAGTCCACCTTCTAGTTGGGATCAAGGGTGCAAGATTACACCCACCACAGTTACCTGCTAGCTCCAAATCTCAAGAAATGAAAAGTAAATTCAGCAANCCATATATCAATGAATTACAAGAGGACACTGACGTATCTCAAGAAAACATTGCTGAGTCCCCTCCTAATTCCGCTTCCACAGCGTTTAACATCGATGGCATGGTCACTTCCCCCAGTACTTCTTCTTCTTCAGCTAAGAGAAGCAGGCGAGCCATACAGAAAAGGGTGGTGCAAATCCCAATCAAGGAGATTGAAGGGCCGAGGCTAAAAGGAGAAAGCAATACCCCACCCTCCGATTCATGGGCATGGAGAAAGTACGGCCAGAAACCCATCAAAGGTTCCCCTTATCCCAGAGGGTACTACAGGTGTAGCAGTTCCAAAGGTTGTCCGGCGAGGAAACAAGTGGAGAGGAGCCGCGTTGACCCCACCATGCTCGTCGTAACCTACTCCTCCGACCACAACCACCCCTGGCCCCTCTCCAGAAACCACCACGGCTCCAGACACACCACCACCGCCAAGAAGCCCGAACCGGACCCGGTCGAGCCGGATGAGAAGTTCTCGGAACTGTGCGGGGACGTCGAGTTGGGGTGGTTTGGGGAGATGGAGACGGCGTCGTCCGCCATTCTCGAGAGCCCAATTATGGCGGCGGAGTTCGATGCTGACGTGGCGTCCGTGTTGTTGCCGATGGGGGAAGAGGAAGAGTCGCTGTTCGCTGACCTNGGGGAGCTGCCGGAGTGCTCCGCGGTGTTCCGGCACGGCTTGCTGGACGACCGGCGGCGGTTCACGCCTCCGTGGTGTGGGACCACAACTTGACAAACTTCATTAGTGCCCNGTTTGACACGTTCTTCGTGCGTCACAAGAAAAAAGATATCCTGATTTATTATTTATTTTTCTTGTTTTCAGATTTTTTCTTTTTAATTTTAATTTTAATTTTTTGTCACTGCTAGCTAGAATGCTAGTGCCTAGTAGTTCCTTCAATGAGATCGAGAGTAGAAACGAGGTATAGAACGAGTTTGGGTGGGAACGGGGNAAGGTGACGTGGCAGTGTGTCCCAACGTGGTTTGTAATTGGCATAACTTGGCCGTCCGTGTGAACCGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00420	54226	55979	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000420s00021423.1	PF03106.10	WRKY	85	143	4.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.067
SRR1783600	control	12.389
SRR1783602	moderate drought stress	13.333
SRR1811619	moderate drought stress	13.456

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.892
DRR006520	Root Summer glycyrrhizin high producing strain	1.755
DRR006521	Root Winter glycyrrhizin high producing strain	0.705
DRR006522	Root Winter glycyrrhizin high producing strain	0.625
DRR006523	Root Summer glycyrrhizin low producing strain	3.194
DRR006524	Root Summer glycyrrhizin low producing strain	3.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.409
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.256

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.915
SRR2868004	Drought Stress (root)	93.650
SRR2967015	Control (root)	98.593

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.847
SRR9715740	Leaf	7.758
SRR9715741	Leaf	47.780
SRR9715739	Root	21.336
SRR9715742	Root	9.777
SRR9715743	Root	10.749

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.260
SRR8749028	MeJA induced 9h	33.263
SRR8749029	MeJA induced 9h	25.836
SRR8749030	Uninduced	13.707
SRR8749031	Uninduced	30.528
SRR8749032	Uninduced	14.972

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.335
SRR8400027	Control - Root	26.953