Gene detail information of Glyur000420s00021421 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18810.2 | 0 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KHN06420.1 | 0 | Putative complex I intermediate-associated protein 30 [Glycine soja] |
| COG | NP_489066.1 | 2.00E-161 | hypothetical protein all5026 [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q9LQI7|CIA30_ARATH | 2.00E-08 | Probable complex I intermediate-associated protein 30 |
| trEMBL | tr|K7KQJ6|K7KQJ6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G29330.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00420 | 37778 | 44416 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000420s00021421.1 | PF13460.1 | NAD_binding_10 | 132 | 251 | 1.30E-11 |
| Glyur000420s00021421.1 | PF08547.7 | CIA30 | 271 | 430 | 4.50E-42 |
| Glyur000420s00021421.1 | PF13460.1 | NAD_binding_10 | 439 | 541 | 1.80E-11 |
| Glyur000420s00021421.2 | PF13460.1 | NAD_binding_10 | 132 | 251 | 6.70E-12 |
| Glyur000420s00021421.2 | PF08547.7 | CIA30 | 271 | 410 | 2.70E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.413 |
| SRR1783600 | control | 8.586 |
| SRR1783602 | moderate drought stress | 13.067 |
| SRR1811619 | moderate drought stress | 13.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.862 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.216 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.629 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.618 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 98.759 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 97.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.076 |
| SRR2868004 | Drought Stress (root) | 17.921 |
| SRR2967015 | Control (root) | 16.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 80.688 |
| SRR9715740 | Leaf | 121.625 |
| SRR9715741 | Leaf | 97.900 |
| SRR9715739 | Root | 2.895 |
| SRR9715742 | Root | 9.202 |
| SRR9715743 | Root | 8.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.103 |
| SRR8749028 | MeJA induced 9h | 20.647 |
| SRR8749029 | MeJA induced 9h | 16.572 |
| SRR8749030 | Uninduced | 4.954 |
| SRR8749031 | Uninduced | 3.942 |
| SRR8749032 | Uninduced | 3.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.227 |
| SRR8400027 | Control - Root | 17.277 |