Gene detail information of Glyur000420s00021413 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 7.00E-39 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | AFK33714.1 | 4.31E-136 | unknown [Lotus japonicus] |
| COG | YP_001817996.1 | 3.00E-06 | beta-Ig-H3/fasciclin [Opitutus terrae PB90-1] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 2.00E-46 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|I3S0C2|I3S0C2_LOTJA | 2.00E-136 | Uncharacterized protein {ECO:0000313|EMBL:AFK33714.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00420 | 3181 | 4089 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000420s00021413.1 | PF02469.17 | Fasciclin | 95 | 229 | 2.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 92.098 |
| SRR1783600 | control | 91.762 |
| SRR1783602 | moderate drought stress | 89.137 |
| SRR1811619 | moderate drought stress | 88.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.866 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.536 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.871 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.738 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.375 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 111.401 |
| SRR2868004 | Drought Stress (root) | 159.509 |
| SRR2967015 | Control (root) | 123.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.203 |
| SRR9715740 | Leaf | 2.958 |
| SRR9715741 | Leaf | 0.213 |
| SRR9715739 | Root | 26.688 |
| SRR9715742 | Root | 131.779 |
| SRR9715743 | Root | 123.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.134 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.070 |
| SRR8749032 | Uninduced | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 363.393 |
| SRR8400027 | Control - Root | 615.032 |