Gene detail

Gene detail information of Glyur000419s00025990.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21760.1	7.00E-161	F-box protein 7
NR	XP_003523431.1	0	PREDICTED: F-box protein 7-like isoform X1 [Glycine max]
Swissprot	tr\|Q9XI00\|SKI32_ARATH	0	F-box protein 7
trEMBL	tr\|I1JZ38\|I1JZ38_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G42640.1}

Sequence

Transcript Sequence

>Glyur000419s00025990.1
GGTCCGGATTTATTCCCTGTCACCAGATTTTCTCCTAGAGCCTCATCCGTCCCGTGGAACCGTACCTTGCGAATGTCGAAACGTCGTCGTTTTGAGAACGTCGCTTCTATTATGCAACCATTGTCCCCGTGTTTCTGATTCTCCTGAATCNATTCCCTTTCCTTCCCTTCTCTCTTTCCTCATCTCAATTTTGGCCTTGTGAAATTCGTGAACGAGCCTCTCACACTTCCGCTTCATGTCTCCATGGCCTCAGGTTCAGAGTTTGCGTTAGCAGCGCCTTCTGAACTCGAGTCAGTTTTGAGGTTGAAGACAGTTAACTACTTTGTTACGAGGAGGCCATGGCTCGATCTTTATGGAGTTAACGTGAGACCTGTTGCNCCATTTGGAAGTGCAAGTAGAAAGCCTTATGTGGATTCCGCACTTATACATCGTTGCTTACCGGATGAGCTGCTCTTTGAGGTCTTTGCTCGAATGACTCCATATGACATGGGAAAAGCATCTTGTGTATGTCGAAAATGGAGGTATACAATTCGTAACCCTGTATTTTGGCGCAATGCATGCTTAAAGGCTTGGCAGCTCTCTGGAGTGGTAGAAAACTATAAGATACTTCAATCAAAATATGATGGCTCATGGCGGAAAATGTGGCTCTCACGACCAAGGTTGCGAACTGATGGTCTTTATGTGAGTAGAAATACCTACATTCGAGCTGGAGTNGCAGAGTGGAAAGTCACTAATCCAGTTCACGTGGTCTGCTATTTCCGGTACATGAGATTCTTTCCTTCTGGACGATTTCTTTACAAGAATTCTTCTCAAAAGATCAAGGATGTGGTGAAGTGCATGAACTTTCGATCATCTAAAGCAGACTGTGTTTTTGGTGGCCACTACACATTGTCAGATGACAAGGTTGAAGCTGCTGTCTTGTATCCAGGCATGCGACCTACTGTTTTGAGGATACGCATGAGGTTAAGAGGAACAACTACCGGGGCAAACAATCGGATGGATTTGATCTCACTCGTCACTAGCGGTGTGAACATTAGCGAAGCAAGTGCACCTGAGGAGGACATTCTTGGAGTCGTTGAAGGATGGCGGGATGATGAAACACACAACCCAGATGTGCCAGCAGTCTCACATAAGAGGGGCATGACTCCCTTTGTCTTTGTTCCATTTGAAGAGGTGGAGACATCTGTTTTGAATCTGCCCGTGGAGAAAATGGATTATTATGTACCTGGTTGAACGATGCCTCAGAATAGAGCTGGTTCATTTGTAAATATTCCTTAAGTTCCAATATATGGTCATAATAATTTGTGTGCTTGTATTGTATGTATGTATGGCAATGGACTAATGGGATTGATTTTGTTTTGGTTCATGTTGCGGAATTATCTTATTGTTCTGCTTTATATGCACCTAGATAACTATAAAATGAACGGATTGTATGTACATTACATAATGGGAAGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00419	116129	124577	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000419s00025990.1	PF12937.2	F-box-like	63	108	6.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.800
SRR1783600	control	40.235
SRR1783602	moderate drought stress	54.487
SRR1811619	moderate drought stress	54.335

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.317
DRR006520	Root Summer glycyrrhizin high producing strain	47.710
DRR006521	Root Winter glycyrrhizin high producing strain	58.542
DRR006522	Root Winter glycyrrhizin high producing strain	57.101
DRR006523	Root Summer glycyrrhizin low producing strain	58.440
DRR006524	Root Summer glycyrrhizin low producing strain	58.553
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.255
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.985

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.418
SRR2868004	Drought Stress (root)	65.955
SRR2967015	Control (root)	75.212

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.250
SRR9715740	Leaf	58.127
SRR9715741	Leaf	51.021
SRR9715739	Root	32.902
SRR9715742	Root	35.739
SRR9715743	Root	36.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.979
SRR8749028	MeJA induced 9h	33.310
SRR8749029	MeJA induced 9h	42.033
SRR8749030	Uninduced	35.993
SRR8749031	Uninduced	69.415
SRR8749032	Uninduced	62.459

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.796
SRR8400027	Control - Root	44.936