Gene detail

Gene detail information of Glyur000419s00025984

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004512338.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum]
COG	YP_004775215.1	6.00E-48	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7KAT7\|G7KAT7_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES94850.1}

Sequence

Transcript Sequence

>Glyur000419s00025984.1
ATGAAGCCTTTTTCTTTCCTCTTACCTATGTTTTGTTTGCTTCTTTTCTTTACTTTAAATTTGATGTGGTTTGGCCCAAACACGATTTTNGCCTTGGCATTTGAAAACCAGACTGATCATTTGGCACTGTTCAAATTCAAGGAATCAATATCCACTGACCCGTATGGAGTTTTAGATTCTTGGAATAGTTCTACCCACTTTTGCAAGTGGCATGGAATCACGTGCAGCCCCATGCATCAAAGAGTTACAGAGTTGGACCTAGAAGGATACCACTTGCATGGATCCATAGCTCCTTATGTTGGCAATCTTTCTTTTCTGAGAAACCTCAACCTTGCAGACAATAACTTCATTGGAAAAATCCCACAAGAATTGGGTCGATTGTTACAACTGCAACAACTCGGTCTNAGCAATAACTCGTTTGCAGGAGAAATTCCTACAAACCTAACAAATTGCTTCAATCTTATAGGCTTATACTTGAGAGGCAACTTTCTGATTGGCAAAATACCGATTTGGTTTGGCTCTCTTCAAAAGCTTCAAGAAGTGAGAATTGGGAATAACAATTTAACCGGAGGAGTCTCGCCATTCATAGGAAATCTTTCATCCTTAACAGCTCTCTCGATTGGTTATAACAACTTAGAGGGAGGTATTCCACAAGAAATATGTCGCCTTAAGAACTTGAAAATAATGGCGGTGGGTATCAACAAACTATCTCACACTTTTCCTTATTGTCTTTACAATATGTCATCTCTTACTATGATCTTAGCTCCAGTGAATCACTTCCATGGCTCTCTTCCACCCAACATGTTTCACACCCTCCTCAATCTACAANTTTTTGCAATTGGAATGAATCAAATCGCAGGTCGAATCCCCACTTCCATTGCAAATGCTTCTAACTTGAGGTTATTTGATATCATTGATAACCAATTTGTTGGACAAGTTCCAAGTCTAGGAAAACTACAAAATCTTTGGGGCCTAAGTTTAGGATTCAACAATTTTGGCGACAATTCAACCAAAGATTTAGAGTTCTTAAAATCATTGACAAACTGCAGTAAGTTGCTAGTGGTTGATTTATCACGTAATAATTTTGGAGGTAGTTTGCCAAATTTTGTAGGAAATTTATCCACCCAACTTAGTCAACTATATGCTGATCGTAATCAGATATCAGGAAAAATTCCCACAGAACTAGGAAATCTAATTGGCTTAACTCTCCTTGTCATGGAACTTAACCACTTTGAAGGAAGTATTCCAGCTACTCTTGGAAAGCTCCAANAGATGCAAAAGCTAGTATTGAGTGGAAACAAGCTATTAGGAGATATTCCTCCNAGTATAGGAAACCTCAGTCAATTGTTTTACTTGGATTTAGGNCAAAATAAGTTCGAAGGAAATATTCCTCCAAGTATCGGAACATGCCAAAAGTTACAATACCTAGANCTTTCACAAAACAATCTCAAAGGATCCATACCCTTAGAGATTTTTAGTCTTTTCTCTTTATCAAACATACTAAACTTATCATACAACTCATTGAATGGTNGCTTACCGGATGAAGTGGGTACGCTAAAGAATATCGATGAGCTAGATGTCTCTGAGAATCATCTGTCCNAGGACATTCCTGGAACCATTGGTGAATGCATAAGCTTAGAATACCTTCATTTGCAAGGGAACTCCATCCATGGAANCATACCATCCTCTTTGGCATCTCTCAAAGGTCTTCGATATTTAGACCTGTCAAGAAATCAGTTGCATGGACCAATTCCTGGTGTTCTGCAGAACATTTCTGTTTTACAACACTTAAATGTATCATTTAACATGTTGGAAGGCGAGGTACCAACAGGAGGTATTTTTGGAAATGCAAGTGGATTAGCGGTGACCGGAAACACTAAGCTTTGTGGAGGAATTTCAAAGTTGCATTTACCGCCATGNCCTGTCAGAGGTATGAAACCAACAAAACACTATACTTTTAGGTTGATAGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATATTGTCATCTATTCTAACTATCTACTGGATGAGGAAAAGAAACAAGAAGNNATCTTTTGATTCACCAACAATTGACCAGCTAGCTAAGGTTTCATACCAAGACCTACATCAGGGAACCGATGGGTTCTCAGCTACAAACTTGATTGGATCAGGAAGCTTTGGTTATGTGTACAAAGGAAATCTTGTCTTGAAACTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCAGAATGTAATGCATTGAAAAATATTAGACATCGAAATCTGGTTAAGATTTTAACCTGTTGTTCTGGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTGCATCAAAGGATAGGAAGCGTGGAGGACCTTCCTAAAGCATTGAACCTTGATCAAAGGTTAAATATCATTATCGATGTTGCTTCTGCGCTACATTATCTACATCATGAATGTGACCAATTGGTCCTTCATTGTGATATGAAACCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATCGCAAGANTTGTCTCAACCATTGATGGTACCTCTCAGAAGGAAACTAGTGGTAGTACAATTGGAATAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGGATGGGCTCTCAAGTGTCCACATATGGTGACATGTATAGCTTTGGGATGCTTATTTTGGAAATGCTTACTGGAAGAAGACCCACTGATGAAATGTTTGAAGATGGTCAAAATCTGCATAACTTGGTTGAAATGTCATTTCCCAATAATCTTATACAGATTTTGGACACGAATCTTGTGCCAAGAGATGAAGAAGCAACAACAGAAGATGGAAATAGTGGGAATCTTAATCCAACTATAGAGAAGAAGTGCTTAGTTTCACTTTTTAGGATTGGACTTTCTTNTTCAGTGGAATCACCCAAGAAAAGAATGAATATAGTGGATTCACTTTGCAGCTATGGTTTCTCCATCTACATTTCAGATGCCACCGCCGGCGAGTTTTGTTACCTACACCGCACTGATGGCAAGGACGTTGCTCCTCTCCTGAATTTCGATCTCTTGCACTCACAACAAACCCTCAATTTGAGAGAATCCATGACCTTCGACGAGGACTTGGAGGCCATGGCATGCTCCGGTAGTTCCGACAACGACGAAGTCGCCGAGGACAATCCATTGGATTCCGATGAAGATCCTGTTGCTGCTGAAGATGAGTTTGAGAGCAAAGAGAATGACTTCACCCACTGCTGGAAAGGTCATACGCTGCAGAGGGGCAACTTTAAGCAAAGGGTTCAACAGAGGATTGGGGACACTCTTAGCAGGACCTTCTTGATCATATTTTGCTGGTGCTATTATGAAAACAACCGGATAATAGAAGCTAATTCTAATTTATATGGACTC

Protein Sequence

>Glyur000419s00025984.1
MKPFSFLLPMFCLLLFFTLNLMWFGPNTIXALAFENQTDHLALFKFKESISTDPYGVLDSWNSSTHFCKWHGITCSPMHQRVTELDLEGYHLHGSIAPYVGNLSFLRNLNLADNNFIGKIPQELGRLLQLQQLGLSNNSFAGEIPTNLTNCFNLIGLYLRGNFLIGKIPIWFGSLQKLQEVRIGNNNLTGGVSPFIGNLSSLTALSIGYNNLEGGIPQEICRLKNLKIMAVGINKLSHTFPYCLYNMSSLTMILAPVNHFHGSLPPNMFHTLLNLQXFAIGMNQIAGRIPTSIANASNLRLFDIIDNQFVGQVPSLGKLQNLWGLSLGFNNFGDNSTKDLEFLKSLTNCSKLLVVDLSRNNFGGSLPNFVGNLSTQLSQLYADRNQISGKIPTELGNLIGLTLLVMELNHFEGSIPATLGKLQXMQKLVLSGNKLLGDIPPSIGNLSQLFYLDLGQNKFEGNIPPSIGTCQKLQYLXLSQNNLKGSIPLEIFSLFSLSNILNLSYNSLNGXLPDEVGTLKNIDELDVSENHLSXDIPGTIGECISLEYLHLQGNSIHGXIPSSLASLKGLRYLDLSRNQLHGPIPGVLQNISVLQHLNVSFNMLEGEVPTGGIFGNASGLAVTGNTKLCGGISKLHLPPXPVRGMKPTKHYTFRLIAVIVSVVAFLLILSSILTIYWMRKRNKKXSFDSPTIDQLAKVSYQDLHQGTDGFSATNLIGSGSFGYVYKGNLVLKLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSGTDYKGQEFKALVFEYMKNGSLEQWLHQRIGSVEDLPKALNLDQRLNIIIDVASALHYLHHECDQLVLHCDMKPSNVLLDDDMVAHVSDFGIARXVSTIDGTSQKETSGSTIGIKGTVGYAPPEYGMGSQVSTYGDMYSFGMLILEMLTGRRPTDEMFEDGQNLHNLVEMSFPNNLIQILDTNLVPRDEEATTEDGNSGNLNPTIEKKCLVSLFRIGLSXSVESPKKRMNIVDSLCSYGFSIYISDATAGEFCYLHRTDGKDVAPLLNFDLLHSQQTLNLRESMTFDEDLEAMACSGSSDNDEVAEDNPLDSDEDPVAAEDEFESKENDFTHCWKGHTLQRGNFKQRVQQRIGDTLSRTFLIIFCWCYYENNRIIEANSNLYGL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00419	90736	97069	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000419s00025984.1	PF08263.7	LRRNT_2	37	76	2.40E-11
Glyur000419s00025984.1	PF00560.28	LRR_1	426	446	1.2
Glyur000419s00025984.1	PF00560.28	LRR_1	472	493	0.31
Glyur000419s00025984.1	PF13855.1	LRR_8	545	604	2.70E-10
Glyur000419s00025984.1	PF07714.12	Pkinase_Tyr	713	928	1.50E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.074
SRR1783600	control	1.038
SRR1783602	moderate drought stress	1.112
SRR1811619	moderate drought stress	1.230

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.541
DRR006520	Root Summer glycyrrhizin high producing strain	1.521
DRR006521	Root Winter glycyrrhizin high producing strain	1.265
DRR006522	Root Winter glycyrrhizin high producing strain	1.560
DRR006523	Root Summer glycyrrhizin low producing strain	1.114
DRR006524	Root Summer glycyrrhizin low producing strain	1.111
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.480

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.046
SRR2868004	Drought Stress (root)	0.992
SRR2967015	Control (root)	1.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.330
SRR9715740	Leaf	3.038
SRR9715741	Leaf	5.610
SRR9715739	Root	0.189
SRR9715742	Root	0.281
SRR9715743	Root	0.270

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.972
SRR8749028	MeJA induced 9h	0.791
SRR8749029	MeJA induced 9h	0.728
SRR8749030	Uninduced	0.702
SRR8749031	Uninduced	0.546
SRR8749032	Uninduced	0.346

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.766
SRR8400027	Control - Root	1.505