Gene detail

Gene detail information of Glyur000419s00025982

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21780.2	1.00E-113	BTB/POZ domain-containing protein
NR	XP_003602063.1	0	TD and POZ domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q9XHZ8\|Y1178_ARATH	3.00E-149	BTB/POZ domain-containing protein At1g21780
trEMBL	tr\|G7J501\|G7J501_MEDTR	0	BTB/POZ domain plant protein {ECO:0000313\|EMBL:AES72314.1}

Sequence

Transcript Sequence

>Glyur000419s00025982.1
GAAGAATGCGTTCACGTTTCCTCTTCGTTGGATTGGATATTTGGATNCAACAAGAACGCGAGACGTGTAAGCAGTACATGGAGAGACAGACAAGGTAGTCAAGACCAACTCTCCGACCAACCTTTGCAGTGGTAAAGGTTTGGTCTTTCTGCTGAGAGAGAGTGTTAAGGCAAAGGCAAAGCCATGGTGGATGATAGGGTGGACACGATTTCCAGATTAGCACAGTGGAAAATCGACAACTTCGGACCTTGTTCCTACAAAAAATCTGACCCTTTCAAGGTCGGAATCTGGAACTGGTACTTTTCGATAGTGAGGAATAGATGCCTCTACATACATCTTTTTCCAGAATCTTCGCGGGTTTCTAAGGAGCACCCACCTCTTGCTCGGTTCATTCTTCGTGTGTCCGTTGCTGGCTCACCCCGCAAGTTTCATATTTCTCCCGTTTATGAAAAGCTGCTTAGGACACATGATGACTTTGTCTGGCCTGTTGAATCTACTTTCGTGGGCCGCTTCATTATTGATGGTGGAAAAGCTAGTTCTATATGGTCATCCGAAGGAGACTCACATTGCATTGCAGCTCAAAGTAGTTCTCTTCATTGCCTCTCTCGCATGCTCGATGAGGCTATACTTGCCGACCTAACCATTATCACGGCCGGTGGTGCGTCGTTGAGAGCTCACAAGGCAATTCTGTCCGCTAGTTCTCCGGTGTTCCAAAGCATGTTTCATCACAACCTNAAGGAAAAAGAGTCATCGACAATCCATATAGAGGACATGTCGCTCGAATCGTGCACGGCCCTTCTGAGTTACTTGTATGGATCAGTTAAGCAAGAAGATTTCCGGAAACACCGGCTCGCATTGCTCAGGGCGGCGAATAAATATGACATTGGTGGTCTGAAAGATATCTGNGAGGAAAGCCTTCTTNAAGATCTTAACTCAGAAAATGTCATTGAGATGCTGAATGAGGCTTGGTTATATCAATTACACAAGTTAAAGAAAGGGTGTTTGAGGTTCTTATTTGAATTTGGTAAAATTTATGATGTTAGAGATGGTGAAAGAAGTAACCTTTTCCAGCATGCTGATAGAGAGTTGGTGATGGAGATGTTTCAAGAGGTGCTTACAATTTCGAACCCACGATAGGTTAATTATGGGAATATACTTGGATCCTGGAAAAGAATGATATATTGATGTGTATAATCACGTTTCCTCTTTCTACTTTTTCCAAGTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00419	59768	63547	-

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000419s00025982.1	PF00651.26	BTB	143	246	6.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.677
SRR1783600	control	6.379
SRR1783602	moderate drought stress	8.340
SRR1811619	moderate drought stress	8.310

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.094
DRR006520	Root Summer glycyrrhizin high producing strain	11.765
DRR006521	Root Winter glycyrrhizin high producing strain	16.515
DRR006522	Root Winter glycyrrhizin high producing strain	15.971
DRR006523	Root Summer glycyrrhizin low producing strain	14.818
DRR006524	Root Summer glycyrrhizin low producing strain	14.596
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.798
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.150

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.964
SRR2868004	Drought Stress (root)	23.384
SRR2967015	Control (root)	28.276

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.036
SRR9715740	Leaf	21.008
SRR9715741	Leaf	20.816
SRR9715739	Root	7.626
SRR9715742	Root	7.069
SRR9715743	Root	6.752

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.426
SRR8749028	MeJA induced 9h	35.495
SRR8749029	MeJA induced 9h	37.123
SRR8749030	Uninduced	39.553
SRR8749031	Uninduced	48.199
SRR8749032	Uninduced	29.272

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.871
SRR8400027	Control - Root	12.381