Gene detail

Gene detail information of Glyur000418s00021358

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01015.1	2.00E-78	TPX2 (targeting protein for Xklp2) protein family
NR	XP_003618715.1	0	hypothetical protein MTR_6g015010 [Medicago truncatula]
Swissprot	tr\|F4I2H7\|TPX2_ARATH	4.00E-14	Protein TPX2
trEMBL	tr\|G7KMP3\|G7KMP3_MEDTR	0	TPX2 (Targeting protein for Xklp2) family protein {ECO:0000313\|EMBL:AES74933.1}

Sequence

Transcript Sequence

>Glyur000418s00021358.1
ATGACTCCAGAGAAACCCTCACAAGTTGAGAACTTGAACCCCAACGTGTCACTTTCTCATCGTAACAACTCACTTCAAATACCTTTAAACAACAAAAACATTAACCCAATTGATGATGAAGATGATGATGCTGGTGTTAAGGTTGTTGCTGCAATTGTCCCTTCCCCTCAGAACAGGATTCGTCAGAGGAAATTCGTGGTAGCAAAGAAGAACAACAATGAAAAAAACCCTAATAAGAAGAAAACGGTTTCGTGCAAGTGCAAAGACAGTGGTGGAACAAAGTGTGTTGTTTGTGAAGCATATCAAAATCTAAGGGCTTCCCAGGAAGAGTTTTTCTCCAAAGAGAAGAACTTTGATGATGATAATGATAAAGAAGAAGATGAGAAAAGTGAAGAAGAAAAAGCTGAGAGTGTGCTTAGTGATGTGATAGAAGCAAGGCTTATGATTCATGACATTGGAAATGAAGGAGAAGAAGAAAAAGAAGAAGAGGGTTGTGATTTGGAGTGTAGTTCAATGGTGAAGCGTAGGAGGGAGAGGGTTTTGGAAGAGGCAAGGAATAGTGTTCCTGAAAGTGGGTCTGGGAGAGTGATGCATTTGGTGAAGGCTTTTGAGAGGCTTCTTTCTATACCAAAGAAGGATCAGAAGAATGAAGAGAATGATGATGAGAAGAAGAACAAGGTGATGAAATGGGCATTACCAGGATTGCAATTGCCACAACAACCATCTACNAGAGAACCTTCTGAAACTGATACAGTTTCTGGTTCTGAGTCTTTGTTTTGTTGCAACTCATCAGAGTTGGTTTTGACATCTGAGAACCTTGGCTTGGATAAAAGGATGATGGTTTCAGTTTCTTCTTCTTGGGATAGTAGCCGTGGAAGTGTGTCTAGTAGGACTTCTTCTGGGGGTAGAAGAAGCATGAGAAATAGCTTGGAATCATCTGAGACTTTTGGAGGAAGGAGGTGGAAGAAGAAGAAGCAGCAGCTAAAAGTCACTAGCCAGAAACCATTCAAGCTAAGAACTGAGCAAAGGGGAAAGATGAAAGAGGAAGAATTTATGAAGAAGGTACAAGAGATGATGACAGAAGAAGAGAAACTGAGGATACCTATTGCACAGGGTCTTCCATGGACAACAGATGAACCTGAGTGCTTGCTAAAACCTCCAGTGAAAGAGAGCACAAAGCCTATTGACCTTAAANTTCATAGTGATTTGAGGGCAATTGATCGTGCTGAATTTGACCATCAGGTGGCAGAAAAATTAAGCTTGATAGAACAACAGAAAATGGAAAGGGAAAGACTACAAAAGTTGGCTGAAGAGGAAGAGATCAGAAGATTGAGGAAGGAGCTCATTCCTAAAGCACAACCTATGCCTTATTTTGATAGACCTTTTATCCCAAGNAGGTCAATGAAGCATCCAACTATACCAAGAGAACCCAAGTTTCACATACCCCACCATAAGAAGATCAAGTGCTTGTCATGGAATGAAATGAGACCCTACTCTTCCTACATCAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00418	155214	157673	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007067 mitotic nuclear division

cellular_component

GO:0005819 spindle

GO:0005874 microtubule

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000418s00021358.1	PF06886.6	TPX2	400	455	1.70E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.952
SRR1783600	control	0.847
SRR1783602	moderate drought stress	0.730
SRR1811619	moderate drought stress	0.704

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.292
DRR006520	Root Summer glycyrrhizin high producing strain	1.275
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.213
DRR006524	Root Summer glycyrrhizin low producing strain	0.286
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.490
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.491

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.046
SRR2868004	Drought Stress (root)	1.978
SRR2967015	Control (root)	2.996

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.619
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.177
SRR9715739	Root	0.000
SRR9715742	Root	0.140
SRR9715743	Root	0.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.133
SRR8749028	MeJA induced 9h	4.602
SRR8749029	MeJA induced 9h	2.667
SRR8749030	Uninduced	0.021
SRR8749031	Uninduced	0.304
SRR8749032	Uninduced	0.151

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.707
SRR8400027	Control - Root	3.285