Gene detail information of Glyur000418s00021355 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02080.1 | 6.00E-47 | Ribosomal protein S19e family protein |
| NR | NP_001235424.1 | 3.12E-61 | uncharacterized protein LOC100527647 [Glycine max] |
| COG | YP_007175351.1 | 2.00E-25 | ribosomal protein S19E (S16A) [Caldisphaera lagunensis DSM 15908] |
| Swissprot | tr|Q9SGA6|RS191_ARATH | 4.00E-59 | 40S ribosomal protein S19-1 |
| trEMBL | tr|C6T4Z6|C6T4Z6_SOYBN | 1.00E-61 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G03520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00418 | 141819 | 142284 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000418s00021355.1 | PF01090.14 | Ribosomal_S19e | 18 | 109 | 7.80E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.038 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.204 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.378 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.875 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.276 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.065 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.352 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.322 |
| SRR2868004 | Drought Stress (root) | 2.451 |
| SRR2967015 | Control (root) | 1.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.015 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.099 |
| SRR8749028 | MeJA induced 9h | 1.356 |
| SRR8749029 | MeJA induced 9h | 0.877 |
| SRR8749030 | Uninduced | 0.047 |
| SRR8749031 | Uninduced | 1.408 |
| SRR8749032 | Uninduced | 2.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.186 |
| SRR8400027 | Control - Root | 0.036 |