Gene detail

Gene detail information of Glyur000418s00021353

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15530.1	4.00E-18	biotin carboxyl carrier protein 2
NR	XP_004489455.1	3.23E-56	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_693729.1	5.00E-16	acetyl-CoA carboxylase, biotin carboxyl carrier protein [Alcanivorax borkumensis SK2]
Swissprot	tr\|Q9LLC1\|BCCP2_ARATH	5.00E-23	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic (Precursor)
trEMBL	tr\|I1LWR8\|I1LWR8_SOYBN	3.00E-44	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G06080.1}

Sequence

Transcript Sequence

>Glyur000418s00021353.1
TATTGTTGGTTGTCCTAAAGTTAGTTGGTTAGTTAAAAATTTGTGACATTGATGGTTGCATCGTAATCATCGAATTCTACACTTGTAAAATCTAGAACACACAGCACTGTCCTCCTTCCAATCCTCCTTTGAAATCTCCTTCCAAAACTCTCTCTCACTCTCTCTCTCTCATTGCACATTTTGCACTTTCTCATATTCCTCACACACACTCTTCGATCTCATCGCCTCCAGCCTTATATTTCTCACCGACCCACATCGCGATTCCCACCATTCTCGCGACCCTTTTGGAAGAAAAGAAGGAAAGTCTAGTTTTTTATTCTTGGGGTTGGTTCCACCAAAATGGCCTCTTTCTCGGTTCCATGCCCCAAGTGCCCTTCTTNTCCTTCCCCTTTGGGATTGAAACCCAACCACAAGCTCTTGTTTCAAAGTGGGTTGGGCTTGAAGCCTTCCCAATCATTCGGATCTTTGTCTGCTGAGTCAGCATCATCTGAGATTCGGATTTTGGCCAATGATGTTACTCATGTTATCACTTGCATAAATTCATTATATGGGTGCTCGCGTTTTGCCCCGGCGCTTAGCCGTGGTGTTAGCGTTTTGGCCCGGCGTGCCGCGTTTTGCCCCGTTCTTGGCCGTGGTGTTAGCGTTTGGTCCCGGCGCTTAGCCACGGTCCCGATTCTTAGCCGTGGTGCTCGCGTTTTGCCCCGGCGCTTAGCCGTGGTGTTAGCGTTTTGGCCCGGCGTGCCGCGTTTTGCCCGCTGCTACTGTTTGGAAATTCCAATTCTGCACCCTGCACTGGTCAATGGACCTAGTGTTGCTTCATCAAACGAGAAAGAAGACCAAAATGGGAATGCCTCTGGTGGCACCGTCGCAGATGCATCTTCAATTTCTGCATTCATGGCCCAAGTTTCTGACCTTGTAAAAAAAAAAGAAGCTTTGCAGCCTCCACCAGCCACAGTTATGGCCCCATCACCACCACCAGTGCACTATCCCACACAACCACCACCCCCACCACCAGCAGCTGCTTCTGCTCCTGCAAGCTCTCCACCTTCAAAAGCAGCACCTGCCTTACCTCCCCCTGGAAAAAAAGTGCAGAAAGGCCAGGTTATATGCATTATCGAGGCTATGAAACTGATGAATGAAATTGAGGCTGATCAATCAGGAACAATAGCAGAGATACTAGTTGAGGATGGAAAATCAGTCACTGTAGACATGCCTCTTTTTGTAATAGTTCCATGAGTACCAGAGAGGACCTTTTACTTCAAAAGTCAATGGGAATCTCCCTTGTTGTTGGATAGCTTGGTTTTCGATCATATAGATTTTCCATTGTTCAGACATTTCTTGAGTGACATTCAGTCTTATTTTAAGAAATCCTTGGCTTCTTAAGCCTCCACTCCCTCCTCGTAATTTATTGAAGAGGCATTTAGGCACGAAGGCCCCGATGTATCAGAATGAATATTCGGACTTTGTAGTTCTAAGCAGTTTTGATATTTGTAGTTGTAGTATTAATGTTTTCTGCATTTGGTTTTGAAGGGTCTCTCTTNCTTGTATGAACCTGCTGGATGTTATGTTGTTACAGTAATTTGTTATAGCATCTTTCTGTGGCTAAAAGACTTGTATTCACAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00418	136268	141045	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006633 fatty acid biosynthetic process

cellular_component
GO:0009317 acetyl-CoA carboxylase complex

molecular_function
GO:0003989 acetyl-CoA carboxylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000418s00021353.1	PF00364.17	Biotin_lipoyl	245	296	2.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.493
SRR1783600	control	14.869
SRR1783602	moderate drought stress	14.563
SRR1811619	moderate drought stress	14.541

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.668
DRR006520	Root Summer glycyrrhizin high producing strain	11.193
DRR006521	Root Winter glycyrrhizin high producing strain	7.198
DRR006522	Root Winter glycyrrhizin high producing strain	8.040
DRR006523	Root Summer glycyrrhizin low producing strain	11.322
DRR006524	Root Summer glycyrrhizin low producing strain	10.674
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.581
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.687

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.551
SRR2868004	Drought Stress (root)	21.455
SRR2967015	Control (root)	15.143

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.708
SRR9715740	Leaf	13.003
SRR9715741	Leaf	9.255
SRR9715739	Root	11.416
SRR9715742	Root	11.947
SRR9715743	Root	12.253

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.259
SRR8749028	MeJA induced 9h	1.019
SRR8749029	MeJA induced 9h	0.650
SRR8749030	Uninduced	0.632
SRR8749031	Uninduced	0.281
SRR8749032	Uninduced	0.481

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.951
SRR8400027	Control - Root	27.489