Gene detail

Gene detail information of Glyur000418s00021341.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02130.1	0	receptor-like protein kinase 2
NR	XP_004489461.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2-like isoform X1 [Cicer arietinum]
COG	YP_004775215.1	3.00E-31	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9S7I6\|RPK2_ARATH	0	LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor)
trEMBL	tr\|I1LWS6\|I1LWS6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G06210.1}

Sequence

Transcript Sequence

>Glyur000418s00021341.1
ATGTTTTCTTCTTCTAATAGTTTCAGTTCAGTGATCAAATGGAGTTCCTTCACTCAATTCCACTTCCTCTTCTTCTTCCTTCTTCTCCTATTACCATCTCAAAACGACGCCGTTTCACCCGTCTCCGACAAATCAACGCTCCTCCGCCTCAAAAGCTCGCTCTCCGACCCCGCCGGTCTTCTCTCGGCGTGGAGCTCCGACGCCGGCGACAGTGACTCCGGCAACTCCAGCCACTGCTCCTGGCCCGGCATCCTCTGCGACTCAAACCACCGCGTTGTAGCACTCAACGTCACCGGAGACGGCGGCGCCGGCAACCGGAGCCCTCACCCGTGCTCCGATTTTTCCCTTTTTCCGCTTTATGGGTTCGGAATTCGGAGAAGCTGCGAGGGTCGTAAGGGTTCGTTGTCCGGAAAGATTCCACCTTTGATCAGTGAGCTCAGAGAGCTTAGGGTTTTGTCNCTCCCCTTCAACATGTTGGAGGGTTCAATCCCTGAAGAGATTTGGGGCATGGAGAAACTTGAGGTTCTTGATCTAGAAGGCAATTCATTAACCGGGTACCTTCCTTTCCGGTTTCAAGGTTTGAAAAANTTGCGGGTTTTGAATCTGGGGTTTAATAAGATTGTTGGGGTGATACCAAGTAGTGCTCTTTCTTCTCTTCAGTTTTTGGAGGTTTTGAATTTAGCTGCAAATAGTTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGCTTAGAGGGGTATATCTGTCATTTAACCAATTCGGTGGGGTTATTCCGGAAGAGGTTGGTCGTGGTGACAATTGTGGGAAACTTGAGCATTTGGATTTGTCTGGGAACTCCTTGGTTCAAGGGATTCCAAGGAGTTTGGGAAATTGTGGGAGTTTGAGGACTCTTTTGTTGTATTCCAATTTGTTGGAAGAGGCTATTCCTGCTGAATTTGGGAACCTTAAGAGCCTCGAGGTGTTGGATGTTTCGAGGAACACACTCAGTGGTTCTGTCCCTATCGAGCTTGGGAAGTGTCTTGAGCTTTCTGTTCTTGTGCTCTCCAACCTCTTCAATCCACTTGGGGATGTTGCATCTGAGTGGAATTTGGTTTCTTTGAATGATGAGTTGAATTATTTTGAAGGTGCAATGCCTGAGGAAGTTGTGTCCCTTCCAAAGCTGAGAATTTTGTGGGTTCCCATGGCNAATTTGGAAGGCGGTTTTCCGAGCAGTTGGGGGCGTGGTTGTGGTAGCTTGGAGATGGTCAACTTGGCTCAGAATTTCTTCACCGGGGAGTTCCCAAACCAGCTTGGTTCCTGCAAGAAGCTGCATTTTCTTGATTTGAGCTTGAACAACCTCACCGGGGAGCTTTCTGAGGAGCTTCATGTTCCTTGTATGACTGTGTTTGATGTTAGTGGGAACATGTTGTCTGGTCCAGTTCCTGGTTTCTCCAACAATGCTTGTTCTCCCTTTCCTTTCTGGAATGGGAATCTGTTCGAAACCAACGACGTATCACTGCCTTATGCATCATTTTTCTCGTCAAAGGCTCGTGAGAGCACACTTTTCGCGTCACTAGGGGGATTTAGTCCTTCAGTTATTCACAACTTTGGGCAAAACAGCTTCACCGGCATTCAGTCATTGCCAATAGCGCGCAACTGGATGGGGGAGAAGAGTGGTTACACGCTTCTCGTCGGAGAGAACAATCTCACGGGACCGTTCCCTACATATTTGTTTGAGAAATGTGATGGATTAGGTGCATTGCTTTTGAATATCAGTTATAATAGGCTATCTGGTCAGGTTCCTTCTAATTTTAGTGGAATATGCAGATCACTGAAGTTTTTTGATGCATCTGGAAATCAGATTTTAGGACCAATTCCCTTTGCTTTAGGGGATTTGGTGTCCCTTGTTTCCCTGAACCTCAGCAGAAACCAGTTAGAAGGTCAGATTCCCACCAGCCTTGGCCAGATGAAGGATCTGAAGTTTCTTTCTTTGGCCGGTAACAACTTGAATGGCTCAATCCCTACCAGCCTGGGGCAGTTGTACTCTTTACAAGTCTTGGACCTGTCTTCAAACTCTCTTACTGGTGAGATTCCAAAGTTTATTGAGAACATGAGAAATCTGACCAATGTTTTGCTCAACAACAACAATCTTTCTGGACACATCCCTGCTGGTTTGGCAGATGTCAATACGCTCTCGGCATTCAACGTGTCTTTCAATAACTTATCCGGATCGTTGCCGTCGAGCAAATGCAGCAGTGCTGTTGGGAATCCATTTCTAAGTTCCTGCCGTGGAGTTTCCCTAACTGTGCCATCAGCAAATCAACAAGGACAGGTTGAGGATACTTCTTCTATTACTTCACAGGCACAAGCTAGTGGAAAGAGTAGTGGGAATGGTTTCAGTGCAATTGAGATAGCATCTATAACTTCCGCTTCAGCCATTGTTTCTGTTCTTATCGCCCTGATCGTTCTATTCATCTACACACGAAAATGGAAGCCGAGGTCCAGAGTTGGTGGTTCTGCCAAAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACATTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCAGGCAACTGTATTGGGAGTGGAGGATTTGGGGCAACTTACAAGGCCGAGATATCGCAAGGAATCTTGGTGGCAGTGAAGCGTCTCGCGGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCAGAGATCAAGACCCTTGGAAGGCTTCACCATCCAAACCTTGTCACCCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTGGAGAAGTTCATCCAGGAGAGGTCCACAAGGGCTGTGGATTGGAGAATCCTACACAAGATTGCATTGGACATCGCCCGCTCGCTCGCATATCTGCACGATCAATGTGTGCCCCGTGTTCTCCACCGTGATGTCAAGCCTAGCAATATCTTGTTGGATGATGATTTCAATGCTTATCTATCTGACTTTGGATTGGCAAGACTTCTGGGGACTTCAGAAACACATGCCACCACCGGTGTGGCAGGGACATTCGGGTATGTGGCTCCTGAATATGCCATGACGTGTCGCGTTTCAGACAAGGCTGACGTGTATAGCTATGGTGTGGTGCTCCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTCTCTTCCTATGGGAATGGTTTCAACATAGTGGCATGGGCATGCATGCTACTTAGGCAAGGAAGGGCAAAGGAGTTCTTCACTGCAGGGTTATGGGATGCAGGACCAGAAAATGATTTGGTAGAGGTCCTACACTTGGCAGTGGAAATTAAACTAATG

Protein Sequence

>Glyur000418s00021341.1
MFSSSNSFSSVIKWSSFTQFHFLFFFLLLLLPSQNDAVSPVSDKSTLLRLKSSLSDPAGLLSAWSSDAGDSDSGNSSHCSWPGILCDSNHRVVALNVTGDGGAGNRSPHPCSDFSLFPLYGFGIRRSCEGRKGSLSGKIPPLISELRELRVLSLPFNMLEGSIPEEIWGMEKLEVLDLEGNSLTGYLPFRFQGLKXLRVLNLGFNKIVGVIPSSALSSLQFLEVLNLAANSLNGSVPGFVGKLRGVYLSFNQFGGVIPEEVGRGDNCGKLEHLDLSGNSLVQGIPRSLGNCGSLRTLLLYSNLLEEAIPAEFGNLKSLEVLDVSRNTLSGSVPIELGKCLELSVLVLSNLFNPLGDVASEWNLVSLNDELNYFEGAMPEEVVSLPKLRILWVPMANLEGGFPSSWGRGCGSLEMVNLAQNFFTGEFPNQLGSCKKLHFLDLSLNNLTGELSEELHVPCMTVFDVSGNMLSGPVPGFSNNACSPFPFWNGNLFETNDVSLPYASFFSSKARESTLFASLGGFSPSVIHNFGQNSFTGIQSLPIARNWMGEKSGYTLLVGENNLTGPFPTYLFEKCDGLGALLLNISYNRLSGQVPSNFSGICRSLKFFDASGNQILGPIPFALGDLVSLVSLNLSRNQLEGQIPTSLGQMKDLKFLSLAGNNLNGSIPTSLGQLYSLQVLDLSSNSLTGEIPKFIENMRNLTNVLLNNNNLSGHIPAGLADVNTLSAFNVSFNNLSGSLPSSKCSSAVGNPFLSSCRGVSLTVPSANQQGQVEDTSSITSQAQASGKSSGNGFSAIEIASITSASAIVSVLIALIVLFIYTRKWKPRSRVGGSAKKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGSGGFGATYKAEISQGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARSLAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWDAGPENDLVEVLHLAVEIKLM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00418	53156	57168	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000418s00021341.1	PF08263.7	LRRNT_2	42	87	5.40E-08
Glyur000418s00021341.1	PF13855.1	LRR_8	172	232	2.70E-08
Glyur000418s00021341.1	PF00560.28	LRR_1	269	291	0.01
Glyur000418s00021341.1	PF13855.1	LRR_8	627	686	1.90E-08
Glyur000418s00021341.1	PF00069.20	Pkinase	861	1059	4.20E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.930
SRR1783600	control	17.829
SRR1783602	moderate drought stress	20.318
SRR1811619	moderate drought stress	19.839

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.864
DRR006520	Root Summer glycyrrhizin high producing strain	25.488
DRR006521	Root Winter glycyrrhizin high producing strain	4.521
DRR006522	Root Winter glycyrrhizin high producing strain	4.166
DRR006523	Root Summer glycyrrhizin low producing strain	32.478
DRR006524	Root Summer glycyrrhizin low producing strain	31.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.992
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.732

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.057
SRR2868004	Drought Stress (root)	34.510
SRR2967015	Control (root)	29.426

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.901
SRR9715740	Leaf	25.979
SRR9715741	Leaf	34.711
SRR9715739	Root	45.292
SRR9715742	Root	34.543
SRR9715743	Root	37.264

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.772
SRR8749028	MeJA induced 9h	16.213
SRR8749029	MeJA induced 9h	6.075
SRR8749030	Uninduced	6.778
SRR8749031	Uninduced	6.075
SRR8749032	Uninduced	5.427

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.701
SRR8400027	Control - Root	23.417