Gene detail

Gene detail information of Glyur000418s00021340.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02130.1	0	receptor-like protein kinase 2
NR	XP_004489461.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2-like isoform X1 [Cicer arietinum]
COG	YP_004775215.1	7.00E-30	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9S7I6\|RPK2_ARATH	0	LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor)
trEMBL	tr\|A0A072U6P6\|A0A072U6P6_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH25051.1}

Sequence

Transcript Sequence

>Glyur000418s00021340.1
ATGTTTTCTTCTTCTAATAGTTTCAGTTCAGTGATCAAATGGAGTTCCTTCACTCAATTCCACTTCCTCTTCTTCTTCCTTCTTCTCCTTTTACCATCTCAAAACGACGCCGTTTCACCCGTCTCCGACAAATCAACGCTCCTCCGCCTCAAAAGCTCGCTCTCCGACCCCGCCGGTCTTCTCTCGGCGTGGAGCTCCGACGCCGGCGACGGTGACTCCAGCCACTGCTCCTGGCCCGGCGTCCTCTGCGACTCCAACCACCGCGTCGTCGCGCTCAACGTCACCGGAGACGGCGGCACCGGCGACTGGAGCCCTCACCCGTGCTCCGATTTTTCCCTTTTTCCGCTCTACGGGTTCGGAATTCGGAGAAGCTGCGAGGGTCGTAAGGGTTCGTTGTTCGGAAAGATTCCATCTTTGATCAGTGAGCTCAAAGAGCTTAGGGTTTTGTCACTCCCCTTCAACATGTTGGAGGGTTCAATCCCTGAAGAGATTTGGGGCATGGAGAAACTTGAGGTTCTTGATCTAGAAGGCAATTCNATAACCGGGTACCTTCCTTTCCGGTTTCAAGGTTTGAAAAAATTGCGGGTTTTGAATCTGGGGTTTAATAAGATTGGTGGGGTGATACCGAGTAATGCTCTTTCTTCTCTTCAGTTTTTGGAGGTTTTGAATTTAGCTGCAAATAGTTTGAACGGTTCTGTTCCTGGTTTTGTTGGGAAGCTTAGAGGGGTGTATTTGTCATTTAACCAACTCAGTGGTATTATTCCTGAAGAGATTGGTGAAACTTGTGGTGGGAAGCTTGAGCATTTGGATTTGTCTGGAAATTCTTTGGTTCAAGGGATTCCAAGGAGTTTGGGGAATTGTGTTTGGTTGAGGACACTTTTGTTGTATTCCAATTTGTTGGAAGAGGCTCTTCCTGCTGAATTTGGGAACCTTAAGAGCCTCGAGGTGTTGGATGTTTCTAGGAACACGCTCAGTGGTTCTGTCCCTAGTAAGCTTGGGAATTGTCTTGAGCTGTCTGTTCTTGTGCTCTCCAACCTCTTCAATCCACTTGGGGATGTTACCAATTTAGTTTCTTTGAATGATGAGTTTAATTATTTTGAAGGTGCAATGCCTGAGGAAGTTGTGTCCCTTCCAAAGCTGAGAATTTTGTGGGCTCCCATGGCGAATTTGGAAGGCGGTTTTCCAAGCGGTTGGGAGCGTGGTTGTGGCAACTTGGAGATGGTCAATTTGGCTCAAAATTTTTTCACTGGGGAGTTCCCAAACCAGCTTGGTTCGTGCAAGAAGCTGCATTTTCTTGATTTGAGCTTGAACAATCTCACCGGGGAGCTTTCTGAGGAGCTTCATGTTCCTTGTATGACTGTGTTTGANGTTAGTGGGAACATGTTGTCTGGTTCAGTTCCTGGTTTCTCCAACAATGCTTGTTCTCCCTTTCCTTTCTGGAATGGGAATCTGTTCGAAACCAACGACGTNTCACTGCCTTATGCATCCTTTTTCTCGTCAAAGGCTCGTGAGAGAACACTTTTCGCGTCACTAGGGGGATTTGGTCCTTCAGTTATTCACAACTTTGGGCAAAACANCTTCACCGGCATTCACTCATTGCCAATAGNGCATGATCGGATGGGGGAGAAGAGTGGTTACACGCTTTTCGTCGGAGAGAACAAGTTCACGGGACCGTTCCCTACATTTTTGTTTGAGAAATGTGATGGATTAGATGCATTGCTTTTGAATGTCAGTTATAATAGGCTCTCTGGTCAGGTTCCTTCTAATTTTAGTGGAATGTGCAGATCACTGAAGTTTTTTGATGCATCTGGAAATCAGATTTCAGGACCACTTCCCGTTGCTTTAGGGGATTTGGTCTCTCTTGTTTCCCTGAACCTCAGTAGAAACCGGTTACAAGGTCAGATTCCAACCAGTCTTGGCCAGATGAAGGATCTGAAATTTCTTTCTTTGGCTGGTAACAAATTGAATGGCTCAATCCCTACCAGCCTGGGGCAGTTGTACTCTTTACAAGTCTTGGACCTTTCTTCAAACTCTCTTACTGGTGAGATTCCAAAGTTTATTGAGAACATGAGAAATCTGACCAATGTTTTGCTTGACAACAACAATCTTTCTGGACACATCCCTGCTGGTTTGGCAGATGTCACTACGCTCTCGGCATTCAACGTGTCTTTCAATAACTTATCGGGATTCTTGCCGTCTAGCAAATGCAGCAGTGCTGTTGGGAATCCATTTCTAAGCTCCTGCCGCGGAGTTTCCCTAACCGTGCCATCAGCAAATAAACAAGGACAGGTTGAGGATACTTCTTCTATTACTGCACAGGCACAAGCTACTGAAAAGAGTAGTGGGAATGGTTTCAGTTCAATTGAGATAGCAGCTATATCTTCTGCTTCGGCCATTGTTTCCGTTCTTATAGCCCTGATCGTTCTATTCTTTTACANACGAAAGTGGAAGCCGAGGTCCAGAGTTGGTGGTTCTGCCAAAAAAGAAGTCACAGTGTTTACTGATATTGGGGTCCCATTGACATTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCAGGTAACTGTATTGGGAATGGAGGATTCGGGGCAACTTACAAAGCCGAGATATCGCAAGGAATCCTGGTGGCAGTGAAGCGTCTCGCAGTTGGACGTTTCCAAGGCATTCAGCAATTCCATGCTGAGATCAAGACCCTTGGAAGGCTTCACCATCCAAATCTTGTCACACTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAACTATTTGCCAGGTGGTAACCTGGAGAAGTTCATCCAGGAGAGGTCCACCAGGGCTGTGGATTGGAGAATCCTTCACAAGATTGCATTGGACATAGCCCGCGCACTCGCCTATCTGCACGACCAATGCGTGCCCCGCGTTCTCCACCGCGATGTCAAGCCAAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCTGACTTTGGATTGGCAAGACTTCTGGGGACTTCAGAAACACATGCCACCACAGGTGTGGCAGGGACATTCGGGTATGTGGCTCCTGAATACGCCATGACGTGCCGCGTTTCAGACAAGGCTGACGTGTATAGCTACGGTGTGGTGCTCCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTCTCTTCCTATGGGAATGGTTTCAACATAGTGGCATGGGCATGCATGCTACTTAGGCAAGGAAGGGCAAAGGAGTTCTTCACTGCAGGGTTATGGGATGCAGGACCAGAAAATGATTTGGTAGAGAAGAATGCAGATACTTGA

Protein Sequence

>Glyur000418s00021340.1
MFSSSNSFSSVIKWSSFTQFHFLFFFLLLLLPSQNDAVSPVSDKSTLLRLKSSLSDPAGLLSAWSSDAGDGDSSHCSWPGVLCDSNHRVVALNVTGDGGTGDWSPHPCSDFSLFPLYGFGIRRSCEGRKGSLFGKIPSLISELKELRVLSLPFNMLEGSIPEEIWGMEKLEVLDLEGNSITGYLPFRFQGLKKLRVLNLGFNKIGGVIPSNALSSLQFLEVLNLAANSLNGSVPGFVGKLRGVYLSFNQLSGIIPEEIGETCGGKLEHLDLSGNSLVQGIPRSLGNCVWLRTLLLYSNLLEEALPAEFGNLKSLEVLDVSRNTLSGSVPSKLGNCLELSVLVLSNLFNPLGDVTNLVSLNDEFNYFEGAMPEEVVSLPKLRILWAPMANLEGGFPSGWERGCGNLEMVNLAQNFFTGEFPNQLGSCKKLHFLDLSLNNLTGELSEELHVPCMTVFXVSGNMLSGSVPGFSNNACSPFPFWNGNLFETNDVSLPYASFFSSKARERTLFASLGGFGPSVIHNFGQNXFTGIHSLPIXHDRMGEKSGYTLFVGENKFTGPFPTFLFEKCDGLDALLLNVSYNRLSGQVPSNFSGMCRSLKFFDASGNQISGPLPVALGDLVSLVSLNLSRNRLQGQIPTSLGQMKDLKFLSLAGNKLNGSIPTSLGQLYSLQVLDLSSNSLTGEIPKFIENMRNLTNVLLDNNNLSGHIPAGLADVTTLSAFNVSFNNLSGFLPSSKCSSAVGNPFLSSCRGVSLTVPSANKQGQVEDTSSITAQAQATEKSSGNGFSSIEIAAISSASAIVSVLIALIVLFFYXRKWKPRSRVGGSAKKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGNGGFGATYKAEISQGILVAVKRLAVGRFQGIQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWDAGPENDLVEKNADT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00418	46220	50025	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000418s00021340.1	PF08263.7	LRRNT_2	42	84	8.10E-10
Glyur000418s00021340.1	PF12799.2	LRR_4	168	205	1.90E-07
Glyur000418s00021340.1	PF00560.28	LRR_1	265	287	0.01
Glyur000418s00021340.1	PF00560.28	LRR_1	313	335	0.89
Glyur000418s00021340.1	PF00560.28	LRR_1	620	641	0.23
Glyur000418s00021340.1	PF13855.1	LRR_8	645	703	1.40E-07
Glyur000418s00021340.1	PF00069.20	Pkinase	854	1052	2.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.430
SRR1783600	control	13.401
SRR1783602	moderate drought stress	13.516
SRR1811619	moderate drought stress	12.965

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.633
DRR006520	Root Summer glycyrrhizin high producing strain	21.763
DRR006521	Root Winter glycyrrhizin high producing strain	4.880
DRR006522	Root Winter glycyrrhizin high producing strain	4.635
DRR006523	Root Summer glycyrrhizin low producing strain	28.360
DRR006524	Root Summer glycyrrhizin low producing strain	28.430
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.184
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.989

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.143
SRR2868004	Drought Stress (root)	25.145
SRR2967015	Control (root)	22.814

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.468
SRR9715740	Leaf	17.148
SRR9715741	Leaf	24.267
SRR9715739	Root	38.000
SRR9715742	Root	32.613
SRR9715743	Root	31.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.653
SRR8749028	MeJA induced 9h	13.470
SRR8749029	MeJA induced 9h	5.687
SRR8749030	Uninduced	6.942
SRR8749031	Uninduced	7.682
SRR8749032	Uninduced	5.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.968
SRR8400027	Control - Root	19.163