Gene detail information of Glyur000416s00028508 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06520.1 | 3.00E-16 | photosystem II subunit X |
| NR | XP_002514063.1 | 4.86E-56 | conserved hypothetical protein [Ricinus communis] |
| trEMBL | tr|B9RK19|B9RK19_RICCO | 2.00E-56 | Putative uncharacterized protein {ECO:0000313|EMBL:EEF48017.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00416 | 106929 | 107291 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000416s00028508.1 | PF06596.6 | PsbX | 83 | 119 | 6.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.057 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.299 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.046 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.307 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 263.905 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 268.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.652 |
| SRR2868004 | Drought Stress (root) | 1.040 |
| SRR2967015 | Control (root) | 0.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 438.580 |
| SRR9715740 | Leaf | 380.528 |
| SRR9715741 | Leaf | 271.913 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.788 |
| SRR9715743 | Root | 0.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.533 |
| SRR8749028 | MeJA induced 9h | 0.429 |
| SRR8749029 | MeJA induced 9h | 0.149 |
| SRR8749030 | Uninduced | 0.551 |
| SRR8749031 | Uninduced | 0.239 |
| SRR8749032 | Uninduced | 0.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.181 |
| SRR8400027 | Control - Root | 0.214 |