Gene detail

Gene detail information of Glyur000416s00028504

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12080.3	6.00E-119	mechanosensitive channel of small conductance-like 10
NR	KHN37785.1	0	Mechanosensitive ion channel protein 10 [Glycine soja]
COG	YP_005071512.1	9.00E-07	MscS mechanosensitive ion channel [Arthrospira platensis NIES-39]
Swissprot	tr\|Q9LYG9\|MSL10_ARATH	6.00E-147	Mechanosensitive ion channel protein 10
trEMBL	tr\|I1MHE0\|I1MHE0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G19320.1}

Sequence

Transcript Sequence

>Glyur000416s00028504.1
AGCGACCAGCATTATATTTTCTCTGATACAGTTTTGGCAGTTGCTCAGTTTACACATTCCCCCTCCTCACCTTGCTTTGAATTTCTCTTCTTGGTATAGCTTTTATCTATTCTCTACTGTTCTATATCTCGGTTTCAACCGAGAAGAGCCTGCTGAATTCTAGGGGGTTTTCGTATCAGACGAATAAATCCTTAAAAACAGTTTGTCTACACATGCCTTAGACTATTGTATTATGTTTGTGGTTCGACTTTCGGTGTATACACGGCTCTTGGTTTGATTGTGGTTCGGTGTGTTCATTGTTTTCCGGCTTCTACACCAACAAGAAGCAAGGAGTTGTCAAGTTTCCACCGTGTTGGCGACAACTACACAGCAGGTTGTTTGGTCTAAGCCAGAGTTCAGAATGATGGAGCCACCATGTCCAGAAGATGCAAGCTTTGTTGAAGAGAGGAGTCACATGATGAANTCCAATTCACCTACATGGAATTATCCTAACAAGAAGGTTGCAGCTACTCCTCCAAGGGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGATGATGCTGATGATAGTGATGATGGTGATGATGATGATGATGATGAAGTGTACAAGACTGCAGATATTGAAGTGAGTAAGAGATCTGGTAAGAGGTGGAAACTAATGGGTTTGATTGAGTGGTTTGCTTTTGTTTGCATTATGGGGTTCTTGATTGCAAGCTTGACTGTTCATAAGTTGAGACACAAGGAGATTTGGGGTTTGGAACTATGGAAGTGGTNTGTGCTGTCAGCGGTTATCCTCTGCGGCAGACTTGTCTCTGANTGGTTTATCAATATTTTGGTTTTCTTGATTGAGAGGAACTTCTTCTTTAAGAAGAAGGTTCTGTATTTTGTCCATGGTGTGAAGAAGAGTGTTATGGCCTTTATATGGTTAAGTCTGGTTCTTTCAGCATGGGGTCTACTTTTCATTCATAAAATCAAGAGATCCAAGAAAATTACTAGGATTCTTCATCATGTTGCTAGGGCCATTGCCTCNTGTCTTGTTGCAACAGCTATATGGTTGGGAAAGACACTGTTGATAAAGCTATTATCTTCACATTTTCAATCCTCCAGGTTTTTTGACAGGGTTCAGGAATCAATCTTTCATCAATACATTCTCAGGACTCTTTCCGGCCCTTCCTTGATGGAGATGGCCGAAACAGTTGGCGAGGCTTCGCGTAGCGGCNGGGTGATTTTCAAGACCTCGATTAGTGACAATGAGAACATTGAAAGGAAGAAAGAACAAGTCATTGATGTAGAGAGGCTCAAGAAAATGAGACGAGGGAAAGTTTCTGCTTGGACAATGAAAGGATTGATTAATGGGATAAGGAGTTCTGGGTTGTCTACCATCACCTATACAACAGCACCAAAGAGTGTTGATGAACATGAGAGTGACCTGAAAGGTAGTGAAATTACTAGTGAGTGGGAAGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTAGCCAAGCCAAGAAGCAAGTACATTGAGAAGGAAGACCTCTTGTGCTTCATGGAAAATGAAGAAGTGGAAAACGTGTTTCCACTATTTGAAGGGGCNATTGAGACTGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGCTTTTCCTTGTGGTGTTTATGTTTGGCAACACAGNTAAGAATGCATTTGAAGCTATTATATTTATCTTTGTGATGCACCCATTTGATGTTGGTGATCGTTGTGTCATTGATGATGTTCAGATGACTGTGGAAAAGATGAACATACTGACTACAGTCTTTTTGAGACATGACAATGAAAAGATATTCTACCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACCGGAGTCCGGAAATGGGCGATGCGGTTGAATTTGCTATTGATATACTTGGAGAGCAGGCCTGAATACTGGCATCCGAACCACTGTGTGATGGTTAAGGATATTGAGAATGTAAGCAATATAACAATGGGTATATATGTTCTTCACACCATAAATTTTCAGAATTACTGGGAAAAGACCAACCGAAGATCTGAATTAGTCCTTGAGGTAAAGAAAGTCCTTGAAGATCTTAATATTAAATATCATCTGCTGCCACAAGAACTTCACCTCATACACTAATGGTTTTCCCCCACATAGTCTTTCCAGTATTGCATTGTGAAAAAAATTGAGATCAAAGATGGTATGTAAGATTATTGATGATGAAATTGCTGTAGAAGAAAGAAGTGATATTGGTTTAGTTTATGCACCGACTCACTGTGATTCCCTATGGAATAGTGAGCTCATAAGCCAAGAAAGATGAAGTTTGATGGCATAGTGTTTTGGGAAGTAGTAACAAAGACACTCAACAAAAGAGAAAATGTTTTGTAGACACCTCATCCGGTGAGAGAAAAAAATAGAGGTAATAAATGTGATAAGTGATATGATGTAATAAGAATAAAGAGATAAAAAAAATAAAGAATTTTGAATGGGTGATGACACTGTATGAATGCCCATGTATCAGGATTCGAACAAAAGTTGTATCATGTTTTTTTACTCTTATGGAATTAGCAGCTTTCAACTTGNAAATTGCATAAAGAATGCCAAGTTGTCATGTTTTTCAATTTATTTTATCCAATTTTAAGAGGCAGAGTATATGTTTGTGTTTTATGTCCGTCTATCATGAATGTTCACAATGGTATTTTGTTGTGTCACGTAGACTTGTATTTATTTAGAGTAAAACGACATTTTAATCCTCTATTTTGTAACTTGCTTAAGAACTAGTCCTCCACTTTAAGAAATAGGCAAATAAGTCCCCTAATTTGAAAAACATTAGTCACGTTAGTCCTTCTTTCATCTCAGTCAATGAACGGTGTCAAAAATGCTGATTTGTCATGTTAAGTGCCAAACTGGCATCTACATGGACACACACGTGGCAGCTGGGGACCAAAATGACATGCCATTTCTCTCTTCGCCCTTCCCTTTCTTCTTTCCCTATTTTCCAGCTAACCTCTGCAACTCGGAATCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00416	88392	94088	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000416s00028504.1	PF00924.13	MS_channel	416	503	2.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.219
SRR1783600	control	6.362
SRR1783602	moderate drought stress	5.429
SRR1811619	moderate drought stress	5.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.936
DRR006520	Root Summer glycyrrhizin high producing strain	43.767
DRR006521	Root Winter glycyrrhizin high producing strain	8.216
DRR006522	Root Winter glycyrrhizin high producing strain	8.118
DRR006523	Root Summer glycyrrhizin low producing strain	22.858
DRR006524	Root Summer glycyrrhizin low producing strain	22.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.004
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.110

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.952
SRR2868004	Drought Stress (root)	3.927
SRR2967015	Control (root)	6.240

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.481
SRR9715740	Leaf	53.917
SRR9715741	Leaf	33.538
SRR9715739	Root	0.878
SRR9715742	Root	19.726
SRR9715743	Root	15.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.116
SRR8400027	Control - Root	11.892