Gene detail information of Glyur000416s00028501 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 7.00E-16 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | XP_004510400.1 | 4.89E-78 | PREDICTED: uncharacterized protein LOC101515491 [Cicer arietinum] |
| Swissprot | tr|O23530|SNC1_ARATH | 1.00E-17 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
| trEMBL | tr|W0M168|W0M168_CICAR | 2.00E-78 | NBS-LRR protein {ECO:0000313|EMBL:AHG29001.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00416 | 64717 | 68111 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.056 |
| SRR1783600 | control | 4.557 |
| SRR1783602 | moderate drought stress | 1.659 |
| SRR1811619 | moderate drought stress | 1.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.481 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.010 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.955 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.134 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.521 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.963 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.508 |
| SRR2868004 | Drought Stress (root) | 5.965 |
| SRR2967015 | Control (root) | 6.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.309 |
| SRR9715740 | Leaf | 2.660 |
| SRR9715741 | Leaf | 4.027 |
| SRR9715739 | Root | 0.647 |
| SRR9715742 | Root | 2.044 |
| SRR9715743 | Root | 1.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.479 |
| SRR8749028 | MeJA induced 9h | 8.526 |
| SRR8749029 | MeJA induced 9h | 5.312 |
| SRR8749030 | Uninduced | 8.034 |
| SRR8749031 | Uninduced | 14.135 |
| SRR8749032 | Uninduced | 10.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.773 |
| SRR8400027 | Control - Root | 3.113 |