Gene detail information of Glyur000416s00028497 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06530.1 | 7.00E-81 | SNF7 family protein |
| NR | XP_006586647.1 | 1.48E-121 | PREDICTED: uncharacterized protein LOC100526885 isoform X1 [Glycine max] |
| Swissprot | tr|Q701F9|VPS2A_ARATH | 2.00E-114 | Vacuolar protein sorting-associated protein 2 homolog 1 |
| trEMBL | tr|I1L1N3|I1L1N3_SOYBN | 6.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G07920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00416 | 13565 | 18483 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000416s00028497.1 | PF03357.16 | Snf7 | 74 | 242 | 2.40E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.505 |
| SRR1783600 | control | 40.984 |
| SRR1783602 | moderate drought stress | 28.950 |
| SRR1811619 | moderate drought stress | 29.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 73.600 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 72.190 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 93.747 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 91.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 186.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 185.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.538 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 62.979 |
| SRR2868004 | Drought Stress (root) | 85.187 |
| SRR2967015 | Control (root) | 57.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 81.438 |
| SRR9715740 | Leaf | 59.729 |
| SRR9715741 | Leaf | 88.318 |
| SRR9715739 | Root | 10.476 |
| SRR9715742 | Root | 51.598 |
| SRR9715743 | Root | 43.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 175.054 |
| SRR8749028 | MeJA induced 9h | 147.903 |
| SRR8749029 | MeJA induced 9h | 278.275 |
| SRR8749030 | Uninduced | 372.471 |
| SRR8749031 | Uninduced | 635.670 |
| SRR8749032 | Uninduced | 497.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.125 |
| SRR8400027 | Control - Root | 69.686 |