Gene detail

Gene detail information of Glyur000415s00025783

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23560.1	1.00E-84	MATE efflux family protein
NR	XP_004488731.1	1.38E-147	PREDICTED: MATE efflux family protein ALF5-like [Cicer arietinum]
COG	YP_003264696.1	9.00E-14	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LUH2\|ALF5_ARATH	7.00E-101	MATE efflux family protein ALF5
trEMBL	tr\|K7M2B0\|K7M2B0_SOYBN	3.00E-146	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000415s00025783.1
ATGGCGGCAAGTAGCAGTTCAGATGGCACAACACCTCTATTAGGGGCAACTGTCACTAATACTGATAATAATAATAATAATAATAATAACAACAATGGAAGAGAAAACAGAGGAGGAGTTCCCCAAGTGGAGCGGGGATGGTGGAACAGAGTCCTGGACATGGAGGAGGCCAAGCATCAACTCTTGTTTTCACTTCCAATGATTCTTACCAACTTGTTCTATTACTTGATCACTCTTGTCTCTGTTATGCTTGTCGGTCACCTTGGTGAGCTTCAGCTTGCTGGTTCCACTCTCGCCAACTCTTGGTTCAGTGTCACTGGCGTCGCCGTCATGCTCGTTCAATTGAATGCAACCATGCTAAATGTTGTCACAAGACTAAACTCTTATGTTCTTTCCCTTACTCCTGTCTTAGAACACATCCTAGTGTTCCTTCATCAATCTCAAGACATTGCTAGAACAGCTGCACTCTACATGAAGTTTCTTGTCCCAGGATTGTTTGCATATAGCTTCTTGCAGAACATCCTGAGGTTTCTACAAACACAGTCTGTTGTAGTGCCACTGGTTATCCTTTCAGCTCTCCCAGCATTGGTTCATGTTGGGATTGCATATGGCTTGGTTCAATGGCCAGCTCTAAGTTTTACAGGTGCACCAGTTGCAACTTCTATTTCACTATGGATATCATTGATGTTGTTGGCCTCCTATGTCATGTATGCAAAGAAGTTCAAGCAGACATGGGAAGGATTTTCAATGCAATCATTCCATTACGTATTGACAAACTTGAAACTAGCCCTGCCCTCGGCAGCAATGGTATGTTTGGAGTATTGGGCTTTCGAAGTTTTGGTTTTCTTAGCTGGATTAATGCCTGACTCACAAATAACAACTTCTCTGATTGCAATATGTGCAAACACAGAATTCATTGCTTACATGATCACTTATGGTCTTAGCGCGGCTGCAAGGTTCGTTGGTCGAATCGAACACACTCTTGGGGTGGCCAGAGGATGTGGTTGGCAGCACTTAGCTGCTTATGTCAACCTTGCAACTTTTTATCTTATAGGTTTACCAATTTCATGTCTCCTTGGATTTAAGACCAATTTGCAGTATAAGGGTTTATGGATTGGTCTGATTTGTGGGCTGGTGTGTCAAGCTGGGACGCTTTTACTTCTCACAAGACGTGCCAAATGGACTAAACTGAATCTCTCTTCCGGGGACAATGCCATTGTTGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00415	165446	168666	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000415s00025783.1	PF01554.13	MatE	134	203	7.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.639
SRR1783600	control	2.617
SRR1783602	moderate drought stress	2.041
SRR1811619	moderate drought stress	2.022

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.968
DRR006520	Root Summer glycyrrhizin high producing strain	0.994
DRR006521	Root Winter glycyrrhizin high producing strain	5.891
DRR006522	Root Winter glycyrrhizin high producing strain	5.808
DRR006523	Root Summer glycyrrhizin low producing strain	1.152
DRR006524	Root Summer glycyrrhizin low producing strain	0.761
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.354
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.254

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.636
SRR2868004	Drought Stress (root)	1.428
SRR2967015	Control (root)	1.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.860
SRR9715740	Leaf	1.408
SRR9715741	Leaf	3.175
SRR9715739	Root	2.703
SRR9715742	Root	3.476
SRR9715743	Root	3.474

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.692
SRR8749028	MeJA induced 9h	3.357
SRR8749029	MeJA induced 9h	2.643
SRR8749030	Uninduced	2.724
SRR8749031	Uninduced	1.614
SRR8749032	Uninduced	2.939

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.526
SRR8400027	Control - Root	2.784