Gene detail information of Glyur000415s00025782 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53880.1 | 8.00E-04 | |
| NR | XP_006370239.1 | 1.84E-11 | hypothetical protein POPTR_0001s40930g [Populus trichocarpa] |
| trEMBL | tr|A9P874|A9P874_POPTR | 7.00E-12 | Uncharacterized protein {ECO:0000313|EMBL:ERP66808.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00415 | 157295 | 157477 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 273.937 |
| SRR1783600 | control | 273.411 |
| SRR1783602 | moderate drought stress | 211.078 |
| SRR1811619 | moderate drought stress | 219.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 690.181 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 655.858 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.176 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.595 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 363.459 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 352.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.382 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 273.738 |
| SRR2868004 | Drought Stress (root) | 162.111 |
| SRR2967015 | Control (root) | 260.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.098 |
| SRR9715740 | Leaf | 9.125 |
| SRR9715741 | Leaf | 9.474 |
| SRR9715739 | Root | 224.519 |
| SRR9715742 | Root | 111.058 |
| SRR9715743 | Root | 161.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 113.995 |
| SRR8749028 | MeJA induced 9h | 67.948 |
| SRR8749029 | MeJA induced 9h | 159.140 |
| SRR8749030 | Uninduced | 14.800 |
| SRR8749031 | Uninduced | 4.690 |
| SRR8749032 | Uninduced | 20.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1025.918 |
| SRR8400027 | Control - Root | 1083.436 |