Gene detail

Gene detail information of Glyur000415s00025780

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53890.1	0	phytosylfokine-alpha receptor 2
NR	XP_007149480.1	0	hypothetical protein PHAVU_005G073800g [Phaseolus vulgaris]
COG	YP_004775215.1	1.00E-36	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9FN37\|PSKR2_ARATH	0	Phytosulfokine receptor 2 (Precursor)
trEMBL	tr\|V7BU37\|V7BU37_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW21474.1}

Sequence

Transcript Sequence

>Glyur000415s00025780.1
ATGGTGCTGTTCAGATGTTTCTCTGTGACACCACTTCAGTGGTGTTTCTTGTCTTGCTTACTTTGCTTGTCTCTGGCTCTTAACAACAACCAAACCTCATCATCCTGTGACCCGGGTGATTTATCAGCTCTGAAGGAGTTTGCAGGCAACCTTACAAATGGCTCTATTGTCAAAGCATGGTCCAATGATGTTACCTGTTGCAACTGGATTGGAGTTGTCTGTGATAATAATGTGACTGGTGTTGGTGATGGAGCAGCTGCTAGTAGAGTGACCAAGTTGATCCTTCCTGCAATGGGTCTCAATGGGACAATTTCACCCTCTTTAGCACAACTAGATCAGCTCAATGTGCTGAATCTCTCATTTAATCTTCTTGGGGGTGGATTGCCTGTGGAGTTCTCCAAGTTGAAGCAGTTGAAGTTCCTTGATGTGAGCCATAACATGCTGTCAGGACCTGTTGTTGGGGCACTTTCTGGTTTGCAATCCATTAAGGTGTTGAATATTTCCAGCAATTTATTTGCTGGTGACCTCTTCCATCTTGATGAATTCCCACATCTCCTTGCTCTCAATGGGAGTAACAATTCATTCACTGGCANATTCAGTTCCCAAATTTGCAGCTCTTCAAGGGATCTTCACACCCTTGATTTGTCTGCAAACCATTTTGTTGGTGGTCTTGAAGGCTTGGACAACTGCACCAAATCCCTGCAACAGTTGCATTTGGATTCCAATTCATTCTCTGGCCCTCTTCCAGATTCATTGTATTCAATGTCAGCCTTGGAGCAATTCTCAGTCTCTGCCAACAATTTCTCTGGCCAGTTAAGCAAGCAACTGAGTAAGCTTTCTAGCCTAAAATCTCTGGTGGTTTCTGGGAACCGGTTTTCAGGGGATCTCCCCGATGTGTTTGGGAACCTTTTGCAACTGGAACAATTAGTAGCACACGCCAATTCATTTTCTGGACCATTACCTTCCTCATTGGCCTTATGCTCTAAGCTTAGGGTGCTTGATCTTAGAAACAATTCCTTGTCAGGTCCTATTGATCTTGATTTCACTGGCTTGTCTAATCTTTGCTCACTGGACCTTGCTAGTAACCATTTCACTGGACCCCTTCCTAGATCCTTGTCCTATTGCCATGAATTGAAGGTTTTAAGCCTAGCTAGGAATGGTTTAAATGGCTCTATCCCTGAAAGCTATGCCAACCTCACCTCACTTTTGTTTGTATCCTTTTCAAACAACAGCTTAGTGAACTTATCTGGGGCTGTGTCTGTTCTTCAGCAGTGCAAAAACCTTACCACTCTTATCCTCACTAGGAATTTCCATGGTGAGGAGATTCCAGAGAGTGCAGTACCAGGATTTGATAGTCTTATGGTTTTAGCACTTGGGAATTGTGGTCTTAAAGGCCATATTCNTTCTTGGCTATCAAAATGCAGGAAATTGGCAGTGCTTGATTTGTCCTGGAACTATCTGAATGGTAGCATTCCTTCTTGGATTGGTCAGATGGACAGTTTGTTCTACTTGGACTTCTCAAATAATTCTCTCACAGGAGAGGTACCAAAAAGTTTGACAGAAATGAGAGGCCTCATGTGCCCAAACTGTGGTAGATCAAATCTTGCTACTTATTCAGGCACTCCTCTCTTTGTTAAGAGAAACACAAGTGCTAGTGGGCTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCCATATACTTGAGCAATAACATGTTGAGTGGAAACATATGGCCTGAAATCGGCCGGTTGAAGGCACTGCATGTCTTAGATTTAAGCAGGAACAACATCAGTGGTACCATTCCTAGCACTATTTCAGAGATGGAGAACTTGGAAACATTGGATTTGTCTTATAATGATCTGTCTGGGACAATCCCTCCATCATTTAACAACTTGACATTCTTGTCAAAGTTCAGTGTGGCATATAATCACCTGGAAGGATCAATTCCAACCGGTGGGCAATTTTTAAGCTTCCCTAGTTCAAGCTTCGTGGGCAATCTGGGGCTTTGCAGGGACATTGATTCTCCTTGCAAAATCATCAACAATATGAGGCCCAATATTTCTTCTGGTTCATCCAGAAAATTTGGTAGAGGCAATGTTCTTGGCATAACAATCAGTGTAGGGATGGGGCTTGCACTGCTGCTTGCAATTATTCTGCTAAGAATGTCAAAGAGGGAGGAAGATAAGCCTATTGATAACTATGATGAGGAGCTAAACAGTACTAGGCCACACAGGTTATCTGAAGCACTTGTTACCTCAAAATTGGTGCTTTTCCAGAATTCAGATTGCAAGGACCTCACAGTTACAGATTTGTTGAAAGCCACAAACAATTTCAACCAGGCAAATATTGTTGGTTGTGGTGGTTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCACAAAAGCAGCCGTGAAGAGACTTTCCGGGGACTGCGGTCAGATGGAACGCGAATTCCAAGCCGAGGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTCGGCATGGGAGCGACAGGTTGCTAATTTACTCATACCTGGAGAATGGAAGCCTGGATTATTGGCTACATGAGTGTGTGGATGGAAATTCGGCTCTGAAATGGGATGTAAGGCTCAAGATTGCACAAGGCGCGGCTCGCGGATTAGCTTACTTGCACAAGGGGTGTGAACCATACATAGTGCACCGTGATGTTAAGTCTAGCAACATACTTTTGGATGATAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCAAGGCTACTTCAACCATATGATACTCATGTCACAACAGACTTGGTAGGAACTTTAGGATACATTCCACCAGAGTATAGTCAGTCGCTAACAGCAACCTTCCGCGGCGATGTCTATAGTTTCGGTGTTGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTGGAAGTCATCAAGGGGAAGAATTGCAGGAATCTGGTGTCTTGGGTTTTTCAGATGAAATCTGAAAACAAGGAGCAGGAAATCTTTGATCCAGCAATTTGGCAGAAGGACCGCGAGAAACAACTGTTGGAGGTGCTTGCCATTGCTTGGAAATGTCTAGACCAAGATCCAAGGCAGAGACCTTCTATTGAAGTTGTTGTTTCATGGCTTGATAGTATAAGATTTGATGGCTGTCAGCAATACTGA

Protein Sequence

>Glyur000415s00025780.1
MVLFRCFSVTPLQWCFLSCLLCLSLALNNNQTSSSCDPGDLSALKEFAGNLTNGSIVKAWSNDVTCCNWIGVVCDNNVTGVGDGAAASRVTKLILPAMGLNGTISPSLAQLDQLNVLNLSFNLLGGGLPVEFSKLKQLKFLDVSHNMLSGPVVGALSGLQSIKVLNISSNLFAGDLFHLDEFPHLLALNGSNNSFTGXFSSQICSSSRDLHTLDLSANHFVGGLEGLDNCTKSLQQLHLDSNSFSGPLPDSLYSMSALEQFSVSANNFSGQLSKQLSKLSSLKSLVVSGNRFSGDLPDVFGNLLQLEQLVAHANSFSGPLPSSLALCSKLRVLDLRNNSLSGPIDLDFTGLSNLCSLDLASNHFTGPLPRSLSYCHELKVLSLARNGLNGSIPESYANLTSLLFVSFSNNSLVNLSGAVSVLQQCKNLTTLILTRNFHGEEIPESAVPGFDSLMVLALGNCGLKGHIXSWLSKCRKLAVLDLSWNYLNGSIPSWIGQMDSLFYLDFSNNSLTGEVPKSLTEMRGLMCPNCGRSNLATYSGTPLFVKRNTSASGLQYNQASSFPPSIYLSNNMLSGNIWPEIGRLKALHVLDLSRNNISGTIPSTISEMENLETLDLSYNDLSGTIPPSFNNLTFLSKFSVAYNHLEGSIPTGGQFLSFPSSSFVGNLGLCRDIDSPCKIINNMRPNISSGSSRKFGRGNVLGITISVGMGLALLLAIILLRMSKREEDKPIDNYDEELNSTRPHRLSEALVTSKLVLFQNSDCKDLTVTDLLKATNNFNQANIVGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGSDRLLIYSYLENGSLDYWLHECVDGNSALKWDVRLKIAQGAARGLAYLHKGCEPYIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQSLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWQKDREKQLLEVLAIAWKCLDQDPRQRPSIEVVVSWLDSIRFDGCQQY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00415	123535	126717	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000415s00025780.1	PF08263.7	LRRNT_2	38	75	1.60E-05
Glyur000415s00025780.1	PF00560.28	LRR_1	281	303	0.43
Glyur000415s00025780.1	PF00560.28	LRR_1	329	351	0.27
Glyur000415s00025780.1	PF13855.1	LRR_8	427	487	5.80E-07
Glyur000415s00025780.1	PF13855.1	LRR_8	587	645	2.50E-08
Glyur000415s00025780.1	PF00069.20	Pkinase	780	1045	9.40E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.130
SRR1783600	control	13.117
SRR1783602	moderate drought stress	12.000
SRR1811619	moderate drought stress	11.936

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.916
DRR006520	Root Summer glycyrrhizin high producing strain	2.808
DRR006521	Root Winter glycyrrhizin high producing strain	5.877
DRR006522	Root Winter glycyrrhizin high producing strain	5.758
DRR006523	Root Summer glycyrrhizin low producing strain	3.191
DRR006524	Root Summer glycyrrhizin low producing strain	3.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.908

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.560
SRR2868004	Drought Stress (root)	46.799
SRR2967015	Control (root)	46.505

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.436
SRR9715740	Leaf	2.343
SRR9715741	Leaf	4.266
SRR9715739	Root	25.026
SRR9715742	Root	19.050
SRR9715743	Root	18.205

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.151
SRR8749028	MeJA induced 9h	45.060
SRR8749029	MeJA induced 9h	11.590
SRR8749030	Uninduced	28.847
SRR8749031	Uninduced	10.541
SRR8749032	Uninduced	7.738

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.613
SRR8400027	Control - Root	45.564