Gene detail

Gene detail information of Glyur000415s00025770.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15220.1	0	Protein kinase superfamily protein
NR	XP_004488744.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase kinase 3-like isoform X4 [Cicer arietinum]
COG	YP_003298703.1	5.00E-30	serine/threonine protein kinase [Thermomonospora curvata DSM 43183]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	1.00E-54	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|A0A072V9F9\|A0A072V9F9_MEDTR	0	MAP kinase {ECO:0000313\|EMBL:KEH38689.1}

Sequence

Transcript Sequence

>Glyur000415s00025770.1
ATGGATGATGTAGCAGGTCTAGCTGAGGCAGCAGGATCAAGATTCACTTCATTGGAGCTTATTGGGCAGGGATCATTTGGTGACGTCTATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTCGCCATCAAAGTGATTGATTTGGATGAATCAGAGGATGAAATTGATGATATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATGTCCATACATTACCGAGTATTATGGTTCCTTTCTCCATCAAACTAAAATTTGGATAATAATGGAATATATGGCTGGCGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCCCTCGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTATCGATTACCTGCATNCTGAAGGCAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGAGTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGAGTTTCTGCACAGTTGACAAGGACAATATCAAAGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAGAATTCAGATGGATATAATGAGAAGGCAGATATTTGGTCTCTAGGGATCACTGCAATTGAAATGGCAAAGGGGGAGCCTCCGCTTGCTGATCTTCACCCCATGAGAGTGCTTTTCATCATACCCCGAGAAAATCCTCCACAGCTGGATGAGCATTTTTCTCGTCCTATGAAAGAATTTGTTTCATCGTGTTTGAAGAAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGGAATGCTAGGAGGAGTCCAAAGCTTTTGGAAAGAATAAGTAGGGAGCGTCCGAAGTACCAAATAAAGGAAGATCTGGGGACACCTAGAAATGGTCCAAGAGGGATTGGGGAGGCATCTGATACTATGAAGGTGCCAAGAGATTTGAGAGGTGAAGGAACTCATCGACCCAGTAGTCAAGGTAGAACCCTGAAAAGTGCTGGATGGGACTTTAGCATTGGTGAATCAGAGGGTACAGGAACCTTTCGAAGTGTTTCGCGGCCACCTCAGTTTAGAGACAAGAAAACTGATGTTTCATACAATCAGCTTACCCAAAGAAAAGCTCCAGATAGCGGCTATCAAGGGAGATCTGCCAATAGAAGTGAAAGTTCCTTTGGAAAAGATCTTAGAGTTCCTTACGATGATGAGCATCTGGATAATCACCTTGAAGATGATGAATTGTCTGGGAATGGATCAGGAACTGTTGTTTTTCGATCTCCAAAAGGATCAAGGTCATCTGCGTTACATGATCAGAGCTCCCAGTCTAGCAGCAGTTATGCTTCTTTTGAAGATGCTTCTACAAGTGGAACTGTTGTTTTACGTAGCCAGCATGATGATTCTGATTCTCCACAGACATTGAGGTCCCGACCGGGACTTCATGACAGAAATTCAAATGCCTCACTGGAAGATAGTGCTGCAAATCTAGCTGAGGCAAAGGCTGCTATCCAAAGAGGGCTAAGGAAAGGGAATGCTCGAGAGAGACATGCCCGGGGAAAAATCAACAATGATACACAGGAAAGAAAGAAAGACCAAATNACCAGCAGCTCCGATTCTTCCAGACCATATCGTGAGTACATTGATGCACAAAAGGGCATGTCAAGATCGCATTATGCTAGTGATGATGAAGAAAGCGCTAGAAGAATATCATCGTCGGTGCCGTTGTCAGTTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCCGCTGATCCAGAAGGGCCAATCGTGCGCGCAGTTATTGATTCTTTAATAAACATGGAGGGCACAAAGCCTAGATCCTGTGATGTTCTAGTCAAAAATTTGCTTCAGCGATTGGCAAGTTCAAAGGAAGATTCATTGAAGGACCTTCAGGGACTGGCAGGCCAACTATTCGGCAAGTCCAAGTCAGCCGAAGCCGAGGCGGATAGCCGGAAGAAACAGCATAACAAGGAACTTCATTCAAATAGCAATTTAAGCCCACTTGCAAGATTTCTTCTCTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00415	56358	64843	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000415s00025770.1	PF00069.20	Pkinase	16	262	3.80E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.959
SRR1783600	control	5.812
SRR1783602	moderate drought stress	5.263
SRR1811619	moderate drought stress	5.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.048
DRR006520	Root Summer glycyrrhizin high producing strain	6.981
DRR006521	Root Winter glycyrrhizin high producing strain	2.782
DRR006522	Root Winter glycyrrhizin high producing strain	2.609
DRR006523	Root Summer glycyrrhizin low producing strain	5.593
DRR006524	Root Summer glycyrrhizin low producing strain	5.655
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.784
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.846

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.618
SRR2868004	Drought Stress (root)	14.984
SRR2967015	Control (root)	15.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.031
SRR9715740	Leaf	4.755
SRR9715741	Leaf	5.945
SRR9715739	Root	1.153
SRR9715742	Root	6.282
SRR9715743	Root	4.870

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.309
SRR8749028	MeJA induced 9h	13.546
SRR8749029	MeJA induced 9h	5.156
SRR8749030	Uninduced	5.330
SRR8749031	Uninduced	2.810
SRR8749032	Uninduced	3.371

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.989
SRR8400027	Control - Root	15.736