Gene detail

Gene detail information of Glyur000415s00025769

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57850.1	2.00E-104	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
NR	XP_004488745.1	0	PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cicer arietinum]
COG	YP_847315.1	6.00E-64	class IV aminotransferase [Syntrophobacter fumaroxidans MPOB]
Swissprot	tr\|Q8L493\|DAAA_ARATH	4.00E-128	D-amino-acid transaminase, chloroplastic {ECO:0000303\|PubMed:18318836} (Precursor)
trEMBL	tr\|I3SWY2\|I3SWY2_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK44774.1}

Sequence

Transcript Sequence

>Glyur000415s00025769.1
ATGGGGAACCCCACTGAGTCCAGTGCATCCTCTCAGAAGTCCCCTGAGGTTGTTGAAAACGATAGTGATTTTAGAGTTCATGTGTTCTNTTCATCATCCGAGTTGCTAGAAAAGCTTCACCAAACATGGAGCTCAGTGGAGAAACAACCATATCCAGCTATGTATTCTAGTGTATATGGAGGTATCATACTTGATCCAGCTATGATGGTAATCCCCATCGATGATCACATGGTACATAGAGGGCATGGTGTGTTTGATACGGCTATTATTTTAGATGGATACCTGTATGAGTTGGATGTTCACCTTGACCGTTTCTTAAGGTCAGCCTCCAAAGCAAAGATATCCTCTCCATTTNCGCGGTCAACTCTTCGCAGCATTCTAATACAACTAACTGCAGCATCAGAATGCAAGAAAGGGACTCTAAGATACTGGCTGAGTGCAGGTCCTGGGGATTTCTTGCTGTCATCAGCAGGATGTCCAAAATCTGCATTCTATGCAGTAGTCATTGACCAAGATTTTTCCCAGTGCAAAGAAGGGGTCAAAGTGATTAGTTCCAATGTACCAATGAAGCCACCCCTATTTGCCACAATGAAAAATGTGAACTATCTTCCTAATGTCCTTTCAGTATTGGAGGCTGAAGAGAAAGGAGCATTTGCTTCTATATGGATTGATGAGGCTGGTTATGTTGCTGAAGGTCCAAATGTGAATGTTGCTTTTATAACTCAAGAAAAGGAACTTGTGATGCCTCCTTTTGAAAATATCCTATATGGTTGCACTGCAAAAAGGCTTCTTGAACTGGCACCAAAGTTGGTTGATCAGGGGCTTCTGAAAAGTGTAACAACTAAAAATATGACTGTGGAGGAAGCTAAAGCTGCTGCTGAAATGATGTATGTNGGAAGCACACTTCCTGTGTTGCCTATCATTATGTGGGATGATCAACCCATTGGCCATGGAAGGGTTGGAGAATTAACAATGTTACTTTCGGATTTGCTATGGGATGATATGGTAGCTGGCTCTGACACNCAGAGAATACTTGTTCCTTATGTTTAGTGAACCTACAAAATCATCAAAGCCTGTTAACAGCTTTCTTCTCACTACTATCTGAAGTGTTCCTAGGAGTTCTTCACTTGTTGCATAGATTTACCTCGAGGTTTCTNTTTGTATTTTGCTTTATGTATCTCACAAGTGTGAACAAGTCCTGAAGTGAAGTAGTAGGTGTTTCCTGCTACACAAAATTTATATATTGAAATGNT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00415	52279	54908	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18482	ADCL	EC:4.1.3.38	Folate biosynthesis	map00790

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000415s00025769.1	PF01063.14	Aminotran_4	97	330	5.30E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.253
SRR1783600	control	3.428
SRR1783602	moderate drought stress	3.028
SRR1811619	moderate drought stress	2.992

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.715
DRR006520	Root Summer glycyrrhizin high producing strain	5.632
DRR006521	Root Winter glycyrrhizin high producing strain	1.811
DRR006522	Root Winter glycyrrhizin high producing strain	1.671
DRR006523	Root Summer glycyrrhizin low producing strain	2.073
DRR006524	Root Summer glycyrrhizin low producing strain	2.030
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.397
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.377

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.947
SRR2868004	Drought Stress (root)	27.757
SRR2967015	Control (root)	21.504

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.835
SRR9715740	Leaf	1.646
SRR9715741	Leaf	2.764
SRR9715739	Root	19.097
SRR9715742	Root	6.188
SRR9715743	Root	9.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.794
SRR8749028	MeJA induced 9h	11.663
SRR8749029	MeJA induced 9h	4.313
SRR8749030	Uninduced	6.454
SRR8749031	Uninduced	3.905
SRR8749032	Uninduced	3.965

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.742
SRR8400027	Control - Root	9.941