Gene detail information of Glyur000413s00015483 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29640.1 | 3.00E-20 | Protein of unknown function, DUF584 |
| NR | XP_009102835.1 | 1.50E-33 | PREDICTED: uncharacterized protein LOC103828949 [Brassica rapa] |
| trEMBL | tr|M4EMY4|M4EMY4_BRARP | 6.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra030154.1-P} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00413 | 154029 | 154403 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000413s00015483.1 | PF04520.8 | Senescence_reg | 13 | 123 | 8.40E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.097 |
| SRR1783600 | control | 0.036 |
| SRR1783602 | moderate drought stress | 0.102 |
| SRR1811619 | moderate drought stress | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.257 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.056 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.658 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.921 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.237 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.452 |
| SRR2868004 | Drought Stress (root) | 30.043 |
| SRR2967015 | Control (root) | 16.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.954 |
| SRR9715740 | Leaf | 2.644 |
| SRR9715741 | Leaf | 19.527 |
| SRR9715739 | Root | 0.653 |
| SRR9715742 | Root | 0.268 |
| SRR9715743 | Root | 0.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.847 |
| SRR8749028 | MeJA induced 9h | 25.343 |
| SRR8749029 | MeJA induced 9h | 10.359 |
| SRR8749030 | Uninduced | 13.362 |
| SRR8749031 | Uninduced | 70.115 |
| SRR8749032 | Uninduced | 26.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.575 |
| SRR8400027 | Control - Root | 5.884 |