Gene detail information of Glyur000413s00015475 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30290.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004485976.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9FIX3|PP407_ARATH | 6.00E-78 | Pentatricopeptide repeat-containing protein At5g39710 |
| trEMBL | tr|K7M151|K7M151_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29341.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00413 | 113723 | 116116 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000413s00015475.1 | PF01535.15 | PPR | 202 | 231 | 0.2 |
| Glyur000413s00015475.1 | PF13812.1 | PPR_3 | 237 | 268 | 0.015 |
| Glyur000413s00015475.1 | PF01535.15 | PPR | 272 | 301 | 0.1 |
| Glyur000413s00015475.1 | PF13041.1 | PPR_2 | 303 | 352 | 3.40E-15 |
| Glyur000413s00015475.1 | PF12854.2 | PPR_1 | 372 | 401 | 5.40E-07 |
| Glyur000413s00015475.1 | PF01535.15 | PPR | 416 | 442 | 0.043 |
| Glyur000413s00015475.1 | PF13041.1 | PPR_2 | 444 | 493 | 3.90E-19 |
| Glyur000413s00015475.1 | PF12854.2 | PPR_1 | 513 | 542 | 3.10E-06 |
| Glyur000413s00015475.1 | PF01535.15 | PPR | 555 | 582 | 0.042 |
| Glyur000413s00015475.1 | PF13041.1 | PPR_2 | 585 | 632 | 1.70E-11 |
| Glyur000413s00015475.1 | PF12854.2 | PPR_1 | 650 | 682 | 7.90E-07 |
| Glyur000413s00015475.1 | PF01535.15 | PPR | 691 | 714 | 0.2 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.956 |
| SRR1783600 | control | 1.952 |
| SRR1783602 | moderate drought stress | 2.759 |
| SRR1811619 | moderate drought stress | 2.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.754 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.806 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.305 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.272 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.832 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.024 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.298 |
| SRR2868004 | Drought Stress (root) | 9.109 |
| SRR2967015 | Control (root) | 7.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.147 |
| SRR9715740 | Leaf | 5.578 |
| SRR9715741 | Leaf | 4.810 |
| SRR9715739 | Root | 0.737 |
| SRR9715742 | Root | 3.211 |
| SRR9715743 | Root | 3.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.864 |
| SRR8749028 | MeJA induced 9h | 7.843 |
| SRR8749029 | MeJA induced 9h | 3.532 |
| SRR8749030 | Uninduced | 7.401 |
| SRR8749031 | Uninduced | 4.988 |
| SRR8749032 | Uninduced | 2.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.816 |
| SRR8400027 | Control - Root | 4.466 |