Gene detail

Gene detail information of Glyur000413s00015474

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73270.1	5.00E-140	serine carboxypeptidase-like 6
NR	XP_006594522.1	0	PREDICTED: serine carboxypeptidase-like 12-like [Glycine max]
COG	YP_002430787.1	2.00E-24	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q9C7Z9\|SCP18_ARATH	9.00E-175	Serine carboxypeptidase-like 18 (Precursor)
trEMBL	tr\|I1M1K5\|I1M1K5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G29370.1}

Sequence

Transcript Sequence

>Glyur000413s00015474.1
ATGGAAATGCTGCTCAGAGGGAAAAGAGAGTGGACATTAAAAATGGCAAAGTTTAATTCAAGTTATGGTAGTTACGGTTTCTTTTATGGGGAGATTTCCTTTCAACTTGCAACTTGTGGCTCCATAGTGCAGTTCCTTCCTGGATTCCAGGGACCCCTTCCCTTTGTGCTTGAAACCGGGTATGTGGGAGTGGGTGAAACAGAGGATGTTCAGGCCTTCTACTATTTCATTGAGTCAGAGAACAATCCAAAGGAGGATCCTCTCATGCTTTGGCTAACCGGTGGACCTGGTTGCTCTGCCCTGTCTGGCCTTGTCTTTGAAATAGGTCCACTTGCATTTAAAAAGGAGGAATNTAATGGGAGCCTGCCTAATTTGGTCTTAAGGCCACACTCATGGACAAAGGTAAGTAGCATTATATTTGTAGATTTGCCTGTTTACACAGGCTTCACTTATGCCAGAACAGAGTCTGCTGCTCAACGAAGCGACTGGACACTTGTTCACCAAACTCATCAATTTCTTAGGAAGTGGTTGATTGATCATCCAAAATTCCAGTCAAATGAAGTTTACATTGGTGGTGATTCATACTCTGGCATTCCTGTTCCAGCAATAGTTCAAGAAATTTCACAAGGAAATGAAAAAGGGGTCCAACCATGGATAAATCTCCAGGGATACCTGCTTGGGAATCCCGCAACAACAAGAAGGGAAAAAAACTATCAAATCCCCTTTGCTCATGGAATGGGACTTATCTCTGATGAACTATACGAGTCACTGCAAAGAAACTGTAGAGGAGATTATATAAATGTAGACACCAGAAATGTATTCTGTTCAAGAGATATGAACTCATATAATGAGGTTACATCNGGACTTAATAAAGCCCATATTTTGGACCCGCTATGTGAGTGGCTCGATAATGAAGACGAAGTTTTTAGGAAGAGATCTCTAATTAAGAAATATCCCTCCAAGCTCCACAATTCACATCTCAAATTGCCACCCTTAAACTGTCGGAGTTATTCATACTTCCTTTGTGCTTATTGGGCCAATGATGATAATGTTCGCAAAGCACTGCACATACACAAGGGAAGTATTGGGAAATGGCGTCGCTGTACTTTTAATATCCCTAATAAGGTGGAAATCCTTAGCAGCTTTGAGTATCATGTTAATCTCAGTAGAAAAGGCTATCGTTCACTGATATACAGTGGCGACCATGACATGTCTATTCCATTCCTTGCGACTCAAGCATGGATAAGAGATTTAAACTACNCCATTGTGGATGATTGGAGACAATGGCATACAAATGGCCAAGTTGCAGGGTACACGAGGACTTACTCTAATCGGATGACATTTGCAACTGTGAAGGCAAGCCTCCTGTTGCACTTGTGGGGTGGAGGACACACAGCTCCCGAGTTCAAGCCTGAAGAATGTTTTGCCATGTATAATAGGTGGATATCTAGGAGGGCTTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00413	108996	112723	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000413s00015474.1	PF00450.17	Peptidase_S10	47	483	2.20E-115
Glyur000413s00015474.2	PF00450.17	Peptidase_S10	47	286	9.40E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.633
SRR1783600	control	2.571
SRR1783602	moderate drought stress	3.506
SRR1811619	moderate drought stress	3.405

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.222
DRR006520	Root Summer glycyrrhizin high producing strain	0.220
DRR006521	Root Winter glycyrrhizin high producing strain	2.454
DRR006522	Root Winter glycyrrhizin high producing strain	2.138
DRR006523	Root Summer glycyrrhizin low producing strain	0.281
DRR006524	Root Summer glycyrrhizin low producing strain	0.226
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.166
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.203

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	75.259
SRR2868004	Drought Stress (root)	98.147
SRR2967015	Control (root)	72.606

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	64.308
SRR9715740	Leaf	38.436
SRR9715741	Leaf	91.423
SRR9715739	Root	3.491
SRR9715742	Root	3.527
SRR9715743	Root	3.591

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.745
SRR8749028	MeJA induced 9h	49.631
SRR8749029	MeJA induced 9h	12.096
SRR8749030	Uninduced	171.176
SRR8749031	Uninduced	177.646
SRR8749032	Uninduced	73.152

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.814
SRR8400027	Control - Root	7.585