Gene detail

Gene detail information of Glyur000413s00015473.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30300.1	2.00E-139	Metallo-hydrolase/oxidoreductase superfamily protein
NR	XP_004485977.1	0	PREDICTED: putative hydrolase C777.06c-like [Cicer arietinum]
COG	NP_212667.1	1.00E-25	phnP protein [Borrelia burgdorferi B31]
trEMBL	tr\|G7IP30\|G7IP30_MEDTR	0	Metallo-hydrolase/oxidoreductase superfamily protein {ECO:0000313\|EMBL:AES64115.1}

Sequence

Transcript Sequence

>Glyur000413s00015473.1
AATCTGCGTATATAAATGAAAAATATTCCCCCTTGCACCTTTGGAATCTTCCCTCTTTCTTCTTTCTTCCCTTCTCTACACTCTCCTTTTTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACCTTTGTCTTGTGGATCCGCCGTCACGGAATGGCCACTCCCAATGGCTCCGACGACGGAAACCACCGCGCAACCACTCCGTCGGAATCGGCATTGATCTTCCTCGGGACAGGTTGCTCCAGCATGGTTCCCAACGTAATGTGCCTCATCCAGCCCTCCAATCCTCCCTGTCCCGTCTGCGTCCAGTCATTGTCTCTCCCTCCCGATCAAAACCCTAATTACAGGGGTAATACATCTCTTCTAATTGATTATTGTGAAAGCAACGGCAATCACAACTATATATTGATTGATGTTGGGAAGACGTTCAGGGAGGCAGTGCTCAGATGGTTTGTTACCCATCGGATTCCAAGAATTGATTCTATTATTTTGACTCATGAACATGCCGATGCAGTCCTTGGATTGGATGATATACGTGCTGTGCAGCCTTTTAGTCCTACAAATGACATTGATCCCACCCCCATCTACCTGAGTCAGCATTCAATGGATAGCATAGCAGAGAAATTTCCTTATCTGGTTCAGAAAAAACACAAGGAAGGACAAGAAATACGAAGGGTAGCTCAGATTGCCTGGAACGTTATTGCCGATGACTGCAATAAACCATTTTTTGCATCAGGATTAAAATTCACTCCTTTACCAGTTATGCATGGAGAGGATTACATCTGTTTGGGCTTTCTTTTTNGTGAGAAAAGTAGGGTGGCTTATATATCTGATGTTTCACGGATTCCTGCTAGTACAGAGTATGTCATTTCGAAAAGCGGAGCTGGACAGTTGGATCTTCTAATACTGGATTCATTGTATAGGGTCAGTAGTTCCATTTTCAAATTTTTGGGTATAAAATATAAATATACTGGATCACATAATGTTCACCTTTGTTTCCCACAGACTCTTGAAACTGTGAAGAGGTTGTGTCCAAAGCAAACCCTATTGATTGGAATGACTCACGAGTTTGATCACCATAAGGACAATGAGTTTTTGACAGAGTGGTCCAAAAGGTATATGTTGTATCTATTTGCAATGAAGTCAAATCTTGACCTTTGCAAATACATTTAGGAAGGAATTCTAGTGCAGCTTGCCCGTGATGGTTTGAGAGTCCCCATAAACTTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00413	102431	107309	-

Gene family

Gene family	subfamily
EAR motif-containing Proteins	other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000413s00015473.1	PF12706.2	Lactamase_B_2	131	348	3.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.637
SRR1783600	control	17.094
SRR1783602	moderate drought stress	8.835
SRR1811619	moderate drought stress	8.472

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.000
DRR006520	Root Summer glycyrrhizin high producing strain	11.491
DRR006521	Root Winter glycyrrhizin high producing strain	7.975
DRR006522	Root Winter glycyrrhizin high producing strain	7.453
DRR006523	Root Summer glycyrrhizin low producing strain	11.820
DRR006524	Root Summer glycyrrhizin low producing strain	11.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.633
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.238

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.774
SRR2868004	Drought Stress (root)	16.271
SRR2967015	Control (root)	13.703

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.431
SRR9715740	Leaf	3.525
SRR9715741	Leaf	5.608
SRR9715739	Root	2.434
SRR9715742	Root	6.659
SRR9715743	Root	6.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.255
SRR8749028	MeJA induced 9h	16.035
SRR8749029	MeJA induced 9h	14.625
SRR8749030	Uninduced	9.717
SRR8749031	Uninduced	10.103
SRR8749032	Uninduced	9.649

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.423
SRR8400027	Control - Root	17.939