Gene detail information of Glyur000413s00015471 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59540.1 | 2.00E-28 | Ribosomal L38e protein family |
| NR | XP_007159382.1 | 1.16E-36 | hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris] |
| Swissprot | tr|O22860|RL38_ARATH | 6.00E-36 | 60S ribosomal protein L38 |
| trEMBL | tr|V7CR14|V7CR14_PHAVU | 4.00E-37 | Uncharacterized protein {ECO:0000313|EMBL:ESW31376.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00413 | 96099 | 96980 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000413s00015471.1 | PF01781.13 | Ribosomal_L38e | 9 | 74 | 1.20E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 114.716 |
| SRR1783600 | control | 112.077 |
| SRR1783602 | moderate drought stress | 63.330 |
| SRR1811619 | moderate drought stress | 63.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 214.586 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 219.106 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 66.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.932 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 144.102 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 141.762 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.484 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 437.463 |
| SRR2868004 | Drought Stress (root) | 262.473 |
| SRR2967015 | Control (root) | 244.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 143.584 |
| SRR9715740 | Leaf | 127.498 |
| SRR9715741 | Leaf | 125.840 |
| SRR9715739 | Root | 234.827 |
| SRR9715742 | Root | 174.695 |
| SRR9715743 | Root | 188.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 307.158 |
| SRR8749028 | MeJA induced 9h | 96.905 |
| SRR8749029 | MeJA induced 9h | 193.215 |
| SRR8749030 | Uninduced | 32.837 |
| SRR8749031 | Uninduced | 16.744 |
| SRR8749032 | Uninduced | 46.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 318.453 |
| SRR8400027 | Control - Root | 266.191 |